Franzosa EA - Search Results

1

Quantitative residue-level structure-evolution relationships in the yeast membrane proteome.

Franzosa EA, Xue R, Xia Y. Franzosa EA, et al. Genome Biol Evol. 2013;5(4):734-44. doi: 10.1093/gbe/evt039. Genome Biol Evol. 2013. PMID: 23512408 Free PMC article.

2

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4.

Blanco-Míguez A, Beghini F, Cumbo F, McIver LJ, Thompson KN, Zolfo M, Manghi P, Dubois L, Huang KD, Thomas AM, Nickols WA, Piccinno G, Piperni E, Punčochář M, Valles-Colomer M, Tett A, Giordano F, Davies R, Wolf J, Berry SE, Spector TD, Franzosa EA, Pasolli E, Asnicar F, Huttenhower C, Segata N. Blanco-Míguez A, et al. Among authors: franzosa ea. Nat Biotechnol. 2023 Nov;41(11):1633-1644. doi: 10.1038/s41587-023-01688-w. Epub 2023 Feb 23. Nat Biotechnol. 2023. PMID: 36823356 Free PMC article.

3

Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease.

Mehta RS, Mayers JR, Zhang Y, Bhosle A, Glasser NR, Nguyen LH, Ma W, Bae S, Branck T, Song K, Sebastian L, Pacheco JA, Seo HS, Clish C, Dhe-Paganon S, Ananthakrishnan AN, Franzosa EA, Balskus EP, Chan AT, Huttenhower C. Mehta RS, et al. Among authors: franzosa ea. Nat Med. 2023 Mar;29(3):700-709. doi: 10.1038/s41591-023-02217-7. Epub 2023 Feb 23. Nat Med. 2023. PMID: 36823301 Free PMC article.

4

Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effects.

Münch PC, Eberl C, Woelfel S, Ring D, Fritz A, Herp S, Lade I, Geffers R, Franzosa EA, Huttenhower C, McHardy AC, Stecher B. Münch PC, et al. Among authors: franzosa ea. Cell Host Microbe. 2023 Jun 14;31(6):1007-1020.e4. doi: 10.1016/j.chom.2023.05.013. Epub 2023 Jun 5. Cell Host Microbe. 2023. PMID: 37279755 Free article.

5

Computational reconstruction of protein-protein interaction networks: algorithms and issues.

Franzosa E, Linghu B, Xia Y. Franzosa E, et al. Methods Mol Biol. 2009;541:89-100. doi: 10.1007/978-1-59745-243-4_5. Methods Mol Biol. 2009. PMID: 19381528 Review.

6

Integrated assessment of genomic correlates of protein evolutionary rate.

Xia Y, Franzosa EA, Gerstein MB. Xia Y, et al. Among authors: franzosa ea. PLoS Comput Biol. 2009 Jun;5(6):e1000413. doi: 10.1371/journal.pcbi.1000413. Epub 2009 Jun 12. PLoS Comput Biol. 2009. PMID: 19521505 Free PMC article.

7

Structural determinants of protein evolution are context-sensitive at the residue level.

Franzosa EA, Xia Y. Franzosa EA, et al. Mol Biol Evol. 2009 Oct;26(10):2387-95. doi: 10.1093/molbev/msp146. Epub 2009 Jul 13. Mol Biol Evol. 2009. PMID: 19597162

8

Protein evolution in yeast transcription factor subnetworks.

Wang Y, Franzosa EA, Zhang XS, Xia Y. Wang Y, et al. Among authors: franzosa ea. Nucleic Acids Res. 2010 Oct;38(18):5959-69. doi: 10.1093/nar/gkq353. Epub 2010 May 13. Nucleic Acids Res. 2010. PMID: 20466810 Free PMC article.

9

Structural principles within the human-virus protein-protein interaction network.

Franzosa EA, Xia Y. Franzosa EA, et al. Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):10538-43. doi: 10.1073/pnas.1101440108. Epub 2011 Jun 16. Proc Natl Acad Sci U S A. 2011. PMID: 21680884 Free PMC article.

10

Heterozygous yeast deletion collection screens reveal essential targets of Hsp90.

Franzosa EA, Albanèse V, Frydman J, Xia Y, McClellan AJ. Franzosa EA, et al. PLoS One. 2011;6(11):e28211. doi: 10.1371/journal.pone.0028211. Epub 2011 Nov 30. PLoS One. 2011. PMID: 22140548 Free PMC article.

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