Brooks BR - Search Results

1

Targeted conformational search with map-restrained self-guided Langevin dynamics: application to flexible fitting into electron microscopic density maps.

Wu X, Subramaniam S, Case DA, Wu KW, Brooks BR. Wu X, et al. Among authors: brooks br. J Struct Biol. 2013 Sep;183(3):429-440. doi: 10.1016/j.jsb.2013.07.006. Epub 2013 Jul 20. J Struct Biol. 2013. PMID: 23876978 Free PMC article.

2

Direct observation of the folding and unfolding of a beta-hairpin in explicit water through computer simulation.

Wu X, Wang S, Brooks BR. Wu X, et al. Among authors: brooks br. J Am Chem Soc. 2002 May 15;124(19):5282-3. doi: 10.1021/ja0257321. J Am Chem Soc. 2002. PMID: 11996565 Free PMC article.

3

Molecular architecture and mechanism of an icosahedral pyruvate dehydrogenase complex: a multifunctional catalytic machine.

Milne JL, Shi D, Rosenthal PB, Sunshine JS, Domingo GJ, Wu X, Brooks BR, Perham RN, Henderson R, Subramaniam S. Milne JL, et al. Among authors: brooks br. EMBO J. 2002 Nov 1;21(21):5587-98. doi: 10.1093/emboj/cdf574. EMBO J. 2002. PMID: 12411477 Free PMC article.

4

A core-weighted fitting method for docking atomic structures into low-resolution maps: application to cryo-electron microscopy.

Wu X, Milne JL, Borgnia MJ, Rostapshov AV, Subramaniam S, Brooks BR. Wu X, et al. Among authors: brooks br. J Struct Biol. 2003 Jan;141(1):63-76. doi: 10.1016/s1047-8477(02)00570-1. J Struct Biol. 2003. PMID: 12576021 Free PMC article.

5

Beta-hairpin folding mechanism of a nine-residue peptide revealed from molecular dynamics simulations in explicit water.

Wu X, Brooks BR. Wu X, et al. Among authors: brooks br. Biophys J. 2004 Apr;86(4):1946-58. doi: 10.1016/S0006-3495(04)74258-7. Biophys J. 2004. PMID: 15041639 Free PMC article.

6

Normal-modes-based prediction of protein conformational changes guided by distance constraints.

Zheng W, Brooks BR. Zheng W, et al. Among authors: brooks br. Biophys J. 2005 May;88(5):3109-17. doi: 10.1529/biophysj.104.058453. Epub 2005 Feb 18. Biophys J. 2005. PMID: 15722427 Free PMC article.

7

Isotropic periodic sum: a method for the calculation of long-range interactions.

Wu X, Brooks BR. Wu X, et al. Among authors: brooks br. J Chem Phys. 2005 Jan 22;122(4):44107. doi: 10.1063/1.1836733. J Chem Phys. 2005. PMID: 15740235 Free PMC article.

8

Probing the "annealing" mechanism of GroEL minichaperone using molecular dynamics simulations.

Stan G, Brooks BR, Thirumalai D. Stan G, et al. Among authors: brooks br. J Mol Biol. 2005 Jul 22;350(4):817-29. doi: 10.1016/j.jmb.2005.05.012. J Mol Biol. 2005. PMID: 15967467

9

Molecular structure of a 9-MDa icosahedral pyruvate dehydrogenase subcomplex containing the E2 and E3 enzymes using cryoelectron microscopy.

Milne JL, Wu X, Borgnia MJ, Lengyel JS, Brooks BR, Shi D, Perham RN, Subramaniam S. Milne JL, et al. Among authors: brooks br. J Biol Chem. 2006 Feb 17;281(7):4364-70. doi: 10.1074/jbc.M504363200. Epub 2005 Nov 23. J Biol Chem. 2006. PMID: 16308322 Free PMC article.

10

Modeling protein conformational changes by iterative fitting of distance constraints using reoriented normal modes.

Zheng W, Brooks BR. Zheng W, et al. Among authors: brooks br. Biophys J. 2006 Jun 15;90(12):4327-36. doi: 10.1529/biophysj.105.076836. Epub 2006 Mar 24. Biophys J. 2006. PMID: 16565046 Free PMC article.

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