Demir Ö - Search Results

1

The local dinucleotide preference of APOBEC3G can be altered from 5'-CC to 5'-TC by a single amino acid substitution.

Rathore A, Carpenter MA, Demir Ö, Ikeda T, Li M, Shaban NM, Law EK, Anokhin D, Brown WL, Amaro RE, Harris RS. Rathore A, et al. Among authors: demir o. J Mol Biol. 2013 Nov 15;425(22):4442-54. doi: 10.1016/j.jmb.2013.07.040. Epub 2013 Aug 11. J Mol Biol. 2013. PMID: 23938202 Free PMC article.

2

Ensemble-based computational approach discriminates functional activity of p53 cancer and rescue mutants.

Demir Ö, Baronio R, Salehi F, Wassman CD, Hall L, Hatfield GW, Chamberlin R, Kaiser P, Lathrop RH, Amaro RE. Demir Ö, et al. PLoS Comput Biol. 2011 Oct;7(10):e1002238. doi: 10.1371/journal.pcbi.1002238. Epub 2011 Oct 20. PLoS Comput Biol. 2011. PMID: 22028641 Free PMC article.

3

Elements of nucleotide specificity in the Trypanosoma brucei mitochondrial RNA editing enzyme RET2.

Demir Ö, Amaro RE. Demir Ö, et al. J Chem Inf Model. 2012 May 25;52(5):1308-18. doi: 10.1021/ci3001327. Epub 2012 May 7. J Chem Inf Model. 2012. PMID: 22512810 Free PMC article.

4

Variable ligand- and receptor-binding hot spots in key strains of influenza neuraminidase.

Votapka L, Demir O, Swift RV, Walker RC, Amaro RE. Votapka L, et al. Among authors: demir o. J Mol Genet Med. 2012;6:293-300. doi: 10.4172/1747-0862.1000052. Epub 2012 May 25. J Mol Genet Med. 2012. PMID: 22872804 Free PMC article.

5

Designing novel inhibitors of Trypanosoma brucei.

Demir O, Amaro RE. Demir O, et al. Methods Mol Biol. 2013;993:231-43. doi: 10.1007/978-1-62703-342-8_15. Methods Mol Biol. 2013. PMID: 23568474

6

Computer-aided discovery of Trypanosoma brucei RNA-editing terminal uridylyl transferase 2 inhibitors.

Demir O, Labaied M, Merritt C, Stuart K, Amaro RE. Demir O, et al. Chem Biol Drug Des. 2014 Aug;84(2):131-9. doi: 10.1111/cbdd.12302. Epub 2014 Jun 5. Chem Biol Drug Des. 2014. PMID: 24903413 Free PMC article.

7

Molecular docking to flexible targets.

Sørensen J, Demir Ö, Swift RV, Feher VA, Amaro RE. Sørensen J, et al. Among authors: demir o. Methods Mol Biol. 2015;1215:445-69. doi: 10.1007/978-1-4939-1465-4_20. Methods Mol Biol. 2015. PMID: 25330975

8

The Binding Interface between Human APOBEC3F and HIV-1 Vif Elucidated by Genetic and Computational Approaches.

Richards C, Albin JS, Demir Ö, Shaban NM, Luengas EM, Land AM, Anderson BD, Holten JR, Anderson JS, Harki DA, Amaro RE, Harris RS. Richards C, et al. Among authors: demir o. Cell Rep. 2015 Dec 1;13(9):1781-8. doi: 10.1016/j.celrep.2015.10.067. Epub 2015 Nov 25. Cell Rep. 2015. PMID: 26628363 Free PMC article.

9

Full-length p53 tetramer bound to DNA and its quaternary dynamics.

Demir Ö, Ieong PU, Amaro RE. Demir Ö, et al. Oncogene. 2017 Mar 9;36(10):1451-1460. doi: 10.1038/onc.2016.321. Epub 2016 Sep 19. Oncogene. 2017. PMID: 27641333 Free PMC article.

10

RNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting.

Rajappa-Titu L, Suematsu T, Munoz-Tello P, Long M, Demir Ö, Cheng KJ, Stagno JR, Luecke H, Amaro RE, Aphasizheva I, Aphasizhev R, Thore S. Rajappa-Titu L, et al. Among authors: demir o. Nucleic Acids Res. 2016 Dec 15;44(22):10862-10878. doi: 10.1093/nar/gkw917. Epub 2016 Oct 15. Nucleic Acids Res. 2016. PMID: 27744351 Free PMC article.

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