den Dunnen JT - Search Results

1

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.

't Hoen PA, Friedländer MR, Almlöf J, Sammeth M, Pulyakhina I, Anvar SY, Laros JF, Buermans HP, Karlberg O, Brännvall M; GEUVADIS Consortium; den Dunnen JT, van Ommen GJ, Gut IG, Guigó R, Estivill X, Syvänen AC, Dermitzakis ET, Lappalainen T. 't Hoen PA, et al. Among authors: den dunnen jt. Nat Biotechnol. 2013 Nov;31(11):1015-22. doi: 10.1038/nbt.2702. Epub 2013 Sep 15. Nat Biotechnol. 2013. PMID: 24037425

2

New methods for next generation sequencing based microRNA expression profiling.

Buermans HP, Ariyurek Y, van Ommen G, den Dunnen JT, 't Hoen PA. Buermans HP, et al. Among authors: den dunnen jt. BMC Genomics. 2010 Dec 20;11:716. doi: 10.1186/1471-2164-11-716. BMC Genomics. 2010. PMID: 21171994 Free PMC article.

3

RNA sequencing: from tag-based profiling to resolving complete transcript structure.

de Klerk E, den Dunnen JT, 't Hoen PA. de Klerk E, et al. Among authors: den dunnen jt. Cell Mol Life Sci. 2014 Sep;71(18):3537-51. doi: 10.1007/s00018-014-1637-9. Epub 2014 May 15. Cell Mol Life Sci. 2014. PMID: 24827995 Free PMC article. Review.

4

Next generation sequencing technology: Advances and applications.

Buermans HP, den Dunnen JT. Buermans HP, et al. Among authors: den dunnen jt. Biochim Biophys Acta. 2014 Oct;1842(10):1932-1941. doi: 10.1016/j.bbadis.2014.06.015. Epub 2014 Jul 1. Biochim Biophys Acta. 2014. PMID: 24995601 Free article. Review.

5

Mutation nomenclature.

den Dunnen JT, Antonarakis SE. den Dunnen JT, et al. Curr Protoc Hum Genet. 2003 Aug;Chapter 7:Unit 7.13. doi: 10.1002/0471142905.hg0713s37. Curr Protoc Hum Genet. 2003. PMID: 18428344 Review.

6

Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies.

Hestand MS, Klingenhoff A, Scherf M, Ariyurek Y, Ramos Y, van Workum W, Suzuki M, Werner T, van Ommen GJ, den Dunnen JT, Harbers M, 't Hoen PA. Hestand MS, et al. Among authors: den dunnen jt. Nucleic Acids Res. 2010 Sep;38(16):e165. doi: 10.1093/nar/gkq602. Epub 2010 Jul 7. Nucleic Acids Res. 2010. PMID: 20615900 Free PMC article.

7

Increased sensitivity of next generation sequencing-based expression profiling after globin reduction in human blood RNA.

Mastrokolias A, den Dunnen JT, van Ommen GB, 't Hoen PA, van Roon-Mom WM. Mastrokolias A, et al. Among authors: den dunnen jt. BMC Genomics. 2012 Jan 18;13:28. doi: 10.1186/1471-2164-13-28. BMC Genomics. 2012. PMID: 22257641 Free PMC article.

8

TSSV: a tool for characterization of complex allelic variants in pure and mixed genomes.

Anvar SY, van der Gaag KJ, van der Heijden JW, Veltrop MH, Vossen RH, de Leeuw RH, Breukel C, Buermans HP, Verbeek JS, de Knijff P, den Dunnen JT, Laros JF. Anvar SY, et al. Among authors: den dunnen jt. Bioinformatics. 2014 Jun 15;30(12):1651-9. doi: 10.1093/bioinformatics/btu068. Epub 2014 Feb 13. Bioinformatics. 2014. PMID: 24532718

9

SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing.

Pulyakhina I, Gazzoli I, 't Hoen PA, Verwey N, den Dunnen JT, Aartsma-Rus A, Laros JF. Pulyakhina I, et al. Among authors: den dunnen jt. Nucleic Acids Res. 2015 Jul 13;43(12):e80. doi: 10.1093/nar/gkv242. Epub 2015 Mar 23. Nucleic Acids Res. 2015. PMID: 25800735 Free PMC article.

10

Short hypervariable microhaplotypes: A novel set of very short high discriminating power loci without stutter artefacts.

van der Gaag KJ, de Leeuw RH, Laros JFJ, den Dunnen JT, de Knijff P. van der Gaag KJ, et al. Among authors: den dunnen jt. Forensic Sci Int Genet. 2018 Jul;35:169-175. doi: 10.1016/j.fsigen.2018.05.008. Epub 2018 May 22. Forensic Sci Int Genet. 2018. PMID: 29852469 Free article.

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