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A clinically validated diagnostic second-generation sequencing assay for detection of hereditary BRCA1 and BRCA2 mutations.
Bosdet IE, Docking TR, Butterfield YS, Mungall AJ, Zeng T, Coope RJ, Yorida E, Chow K, Bala M, Young SS, Hirst M, Birol I, Moore RA, Jones SJ, Marra MA, Holt R, Karsan A. Bosdet IE, et al. Among authors: bala m. J Mol Diagn. 2013 Nov;15(6):796-809. doi: 10.1016/j.jmoldx.2013.07.004. Epub 2013 Oct 4. J Mol Diagn. 2013. PMID: 24094589 Free article.
Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis.
Haile S, Pandoh P, McDonald H, Corbett RD, Tsao P, Kirk H, MacLeod T, Jones M, Bilobram S, Brooks D, Smailus D, Steidl C, Scott DW, Bala M, Hirst M, Miller D, Moore RA, Mungall AJ, Coope RJ, Ma Y, Zhao Y, Holt RA, Jones SJ, Marra MA. Haile S, et al. Among authors: bala m. PLoS One. 2017 Jun 1;12(6):e0178706. doi: 10.1371/journal.pone.0178706. eCollection 2017. PLoS One. 2017. PMID: 28570594 Free PMC article.
Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing.
Haile S, Corbett RD, MacLeod T, Bilobram S, Smailus D, Tsao P, Kirk H, McDonald H, Pandoh P, Bala M, Hirst M, Miller D, Moore RA, Mungall AJ, Schein J, Coope RJ, Ma Y, Zhao Y, Holt RA, Jones SJ, Marra MA. Haile S, et al. Among authors: bala m. BMC Genomics. 2017 Jul 5;18(1):515. doi: 10.1186/s12864-017-3900-6. BMC Genomics. 2017. PMID: 28679365 Free PMC article.
Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples.
Haile S, Corbett RD, Bilobram S, Bye MH, Kirk H, Pandoh P, Trinh E, MacLeod T, McDonald H, Bala M, Miller D, Novik K, Coope RJ, Moore RA, Zhao Y, Mungall AJ, Ma Y, Holt RA, Jones SJ, Marra MA. Haile S, et al. Among authors: bala m. Nucleic Acids Res. 2019 Jan 25;47(2):e12. doi: 10.1093/nar/gky1142. Nucleic Acids Res. 2019. PMID: 30418619 Free PMC article.
Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA.
Haile S, Corbett RD, Bilobram S, Mungall K, Grande BM, Kirk H, Pandoh P, MacLeod T, McDonald H, Bala M, Coope RJ, Moore RA, Mungall AJ, Zhao Y, Morin RD, Jones SJ, Marra MA. Haile S, et al. Among authors: bala m. PLoS One. 2019 Oct 31;14(10):e0224578. doi: 10.1371/journal.pone.0224578. eCollection 2019. PLoS One. 2019. PMID: 31671154 Free PMC article.
A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells.
Haile S, Corbett RD, LeBlanc VG, Wei L, Pleasance S, Bilobram S, Nip KM, Brown K, Trinh E, Smith J, Trinh DL, Bala M, Chuah E, Coope RJN, Moore RA, Mungall AJ, Mungall KL, Zhao Y, Hirst M, Aparicio S, Birol I, Jones SJM, Marra MA. Haile S, et al. Among authors: bala m. Front Genet. 2021 Jun 3;12:665888. doi: 10.3389/fgene.2021.665888. eCollection 2021. Front Genet. 2021. PMID: 34149808 Free PMC article.
Adaptable and comprehensive approaches for long-read nanopore sequencing of polyadenylated and non-polyadenylated RNAs.
Haile S, Corbett RD, O'Neill K, Xu J, Smailus DE, Pandoh PK, Bayega A, Bala M, Chuah E, Coope RJN, Moore RA, Mungall KL, Zhao Y, Ma Y, Marra MA, Jones SJM, Mungall AJ. Haile S, et al. Among authors: bala m. Front Genet. 2024 Dec 2;15:1466338. doi: 10.3389/fgene.2024.1466338. eCollection 2024. Front Genet. 2024. PMID: 39687742 Free PMC article.
800 results