Hatzimanikatis V - Search Results

1

A genome-scale integration and analysis of Lactococcus lactis translation data.

Racle J, Picard F, Girbal L, Cocaign-Bousquet M, Hatzimanikatis V. Racle J, et al. Among authors: hatzimanikatis v. PLoS Comput Biol. 2013;9(10):e1003240. doi: 10.1371/journal.pcbi.1003240. Epub 2013 Oct 10. PLoS Comput Biol. 2013. PMID: 24130467 Free PMC article.

2

A computational framework for the design of optimal protein synthesis.

Racle J, Overney J, Hatzimanikatis V. Racle J, et al. Among authors: hatzimanikatis v. Biotechnol Bioeng. 2012 Aug;109(8):2127-33. doi: 10.1002/bit.24463. Epub 2012 Feb 24. Biotechnol Bioeng. 2012. PMID: 22334333

3

A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor.

Fierro-Monti I, Racle J, Hernandez C, Waridel P, Hatzimanikatis V, Quadroni M. Fierro-Monti I, et al. Among authors: hatzimanikatis v. PLoS One. 2013 Nov 27;8(11):e80423. doi: 10.1371/journal.pone.0080423. eCollection 2013. PLoS One. 2013. PMID: 24312217 Free PMC article.

4

Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis.

Tymoshenko S, Oppenheim RD, Agren R, Nielsen J, Soldati-Favre D, Hatzimanikatis V. Tymoshenko S, et al. Among authors: hatzimanikatis v. PLoS Comput Biol. 2015 May 22;11(5):e1004261. doi: 10.1371/journal.pcbi.1004261. eCollection 2015 May. PLoS Comput Biol. 2015. PMID: 26001086 Free PMC article.

5

Noise analysis of genome-scale protein synthesis using a discrete computational model of translation.

Racle J, Stefaniuk AJ, Hatzimanikatis V. Racle J, et al. Among authors: hatzimanikatis v. J Chem Phys. 2015 Jul 28;143(4):044109. doi: 10.1063/1.4926536. J Chem Phys. 2015. PMID: 26233109

6

Analysis of Translation Elongation Dynamics in the Context of an Escherichia coli Cell.

Vieira JP, Racle J, Hatzimanikatis V. Vieira JP, et al. Among authors: hatzimanikatis v. Biophys J. 2016 May 10;110(9):2120-31. doi: 10.1016/j.bpj.2016.04.004. Biophys J. 2016. PMID: 27166819 Free PMC article.

7

redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models.

Ataman M, Hernandez Gardiol DF, Fengos G, Hatzimanikatis V. Ataman M, et al. Among authors: hatzimanikatis v. PLoS Comput Biol. 2017 Jul 20;13(7):e1005444. doi: 10.1371/journal.pcbi.1005444. eCollection 2017 Jul. PLoS Comput Biol. 2017. PMID: 28727725 Free PMC article.

8

Investigating the deregulation of metabolic tasks via Minimum Network Enrichment Analysis (MiNEA) as applied to nonalcoholic fatty liver disease using mouse and human omics data.

Pandey V, Hatzimanikatis V. Pandey V, et al. Among authors: hatzimanikatis v. PLoS Comput Biol. 2019 Apr 19;15(4):e1006760. doi: 10.1371/journal.pcbi.1006760. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 31002661 Free PMC article.

9

Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models.

Pandey V, Hadadi N, Hatzimanikatis V. Pandey V, et al. Among authors: hatzimanikatis v. PLoS Comput Biol. 2019 May 13;15(5):e1007036. doi: 10.1371/journal.pcbi.1007036. eCollection 2019 May. PLoS Comput Biol. 2019. PMID: 31083653 Free PMC article.

10

From network models to network responses: integration of thermodynamic and kinetic properties of yeast genome-scale metabolic networks.

Soh KC, Miskovic L, Hatzimanikatis V. Soh KC, et al. Among authors: hatzimanikatis v. FEMS Yeast Res. 2012 Mar;12(2):129-43. doi: 10.1111/j.1567-1364.2011.00771.x. Epub 2011 Dec 19. FEMS Yeast Res. 2012. PMID: 22129227 Review.

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