Racle J - Search Results

1

A genome-scale integration and analysis of Lactococcus lactis translation data.

Racle J, Picard F, Girbal L, Cocaign-Bousquet M, Hatzimanikatis V. Racle J, et al. PLoS Comput Biol. 2013;9(10):e1003240. doi: 10.1371/journal.pcbi.1003240. Epub 2013 Oct 10. PLoS Comput Biol. 2013. PMID: 24130467 Free PMC article.

2

A computational framework for the design of optimal protein synthesis.

Racle J, Overney J, Hatzimanikatis V. Racle J, et al. Biotechnol Bioeng. 2012 Aug;109(8):2127-33. doi: 10.1002/bit.24463. Epub 2012 Feb 24. Biotechnol Bioeng. 2012. PMID: 22334333

3

A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor.

Fierro-Monti I, Racle J, Hernandez C, Waridel P, Hatzimanikatis V, Quadroni M. Fierro-Monti I, et al. Among authors: racle j. PLoS One. 2013 Nov 27;8(11):e80423. doi: 10.1371/journal.pone.0080423. eCollection 2013. PLoS One. 2013. PMID: 24312217 Free PMC article.

4

Noise analysis of genome-scale protein synthesis using a discrete computational model of translation.

Racle J, Stefaniuk AJ, Hatzimanikatis V. Racle J, et al. J Chem Phys. 2015 Jul 28;143(4):044109. doi: 10.1063/1.4926536. J Chem Phys. 2015. PMID: 26233109

5

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.

SIB Swiss Institute of Bioinformatics Members. SIB Swiss Institute of Bioinformatics Members. Nucleic Acids Res. 2016 Jan 4;44(D1):D27-37. doi: 10.1093/nar/gkv1310. Epub 2015 Nov 28. Nucleic Acids Res. 2016. PMID: 26615188 Free PMC article.

6

Analysis of Translation Elongation Dynamics in the Context of an Escherichia coli Cell.

Vieira JP, Racle J, Hatzimanikatis V. Vieira JP, et al. Among authors: racle j. Biophys J. 2016 May 10;110(9):2120-31. doi: 10.1016/j.bpj.2016.04.004. Biophys J. 2016. PMID: 27166819 Free PMC article.

7

How to Predict Binding Specificity and Ligands for New MHC-II Alleles with MixMHC2pred.

Racle J, Gfeller D. Racle J, et al. Methods Mol Biol. 2024;2809:215-235. doi: 10.1007/978-1-0716-3874-3_14. Methods Mol Biol. 2024. PMID: 38907900

8

Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes.

Racle J, Michaux J, Rockinger GA, Arnaud M, Bobisse S, Chong C, Guillaume P, Coukos G, Harari A, Jandus C, Bassani-Sternberg M, Gfeller D. Racle J, et al. Nat Biotechnol. 2019 Nov;37(11):1283-1286. doi: 10.1038/s41587-019-0289-6. Epub 2019 Oct 14. Nat Biotechnol. 2019. PMID: 31611696

9

Robust estimation of cancer and immune cell-type proportions from bulk tumor ATAC-Seq data.

Gabriel AA, Racle J, Falquet M, Jandus C, Gfeller D. Gabriel AA, et al. Among authors: racle j. Elife. 2024 Oct 9;13:RP94833. doi: 10.7554/eLife.94833. Elife. 2024. PMID: 39383060 Free PMC article.

10

EPIC: A Tool to Estimate the Proportions of Different Cell Types from Bulk Gene Expression Data.

Racle J, Gfeller D. Racle J, et al. Methods Mol Biol. 2020;2120:233-248. doi: 10.1007/978-1-0716-0327-7_17. Methods Mol Biol. 2020. PMID: 32124324

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