Ouyang Z - Search Results

1

STAT3 targets suggest mechanisms of aggressive tumorigenesis in diffuse large B-cell lymphoma.

Hardee J, Ouyang Z, Zhang Y, Kundaje A, Lacroute P, Snyder M. Hardee J, et al. Among authors: ouyang z. G3 (Bethesda). 2013 Dec 9;3(12):2173-85. doi: 10.1534/g3.113.007674. G3 (Bethesda). 2013. PMID: 24142927 Free PMC article.

2

Correlation of Global MicroRNA Expression With Basal Cell Carcinoma Subtype.

Heffelfinger C, Ouyang Z, Engberg A, Leffell DJ, Hanlon AM, Gordon PB, Zheng W, Zhao H, Snyder MP, Bale AE. Heffelfinger C, et al. Among authors: ouyang z. G3 (Bethesda). 2012 Feb;2(2):279-86. doi: 10.1534/g3.111.001115. Epub 2012 Feb 1. G3 (Bethesda). 2012. PMID: 22384406 Free PMC article.

3

An integrated encyclopedia of DNA elements in the human genome.

ENCODE Project Consortium. ENCODE Project Consortium. Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247. Nature. 2012. PMID: 22955616 Free PMC article.

4

Architecture of the human regulatory network derived from ENCODE data.

Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, Alexander R, Min R, Alves P, Abyzov A, Addleman N, Bhardwaj N, Boyle AP, Cayting P, Charos A, Chen DZ, Cheng Y, Clarke D, Eastman C, Euskirchen G, Frietze S, Fu Y, Gertz J, Grubert F, Harmanci A, Jain P, Kasowski M, Lacroute P, Leng JJ, Lian J, Monahan H, O'Geen H, Ouyang Z, Partridge EC, Patacsil D, Pauli F, Raha D, Ramirez L, Reddy TE, Reed B, Shi M, Slifer T, Wang J, Wu L, Yang X, Yip KY, Zilberman-Schapira G, Batzoglou S, Sidow A, Farnham PJ, Myers RM, Weissman SM, Snyder M. Gerstein MB, et al. Among authors: ouyang z. Nature. 2012 Sep 6;489(7414):91-100. doi: 10.1038/nature11245. Nature. 2012. PMID: 22955619 Free PMC article.

5

SeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data.

Ouyang Z, Snyder MP, Chang HY. Ouyang Z, et al. Genome Res. 2013 Feb;23(2):377-87. doi: 10.1101/gr.138545.112. Epub 2012 Oct 11. Genome Res. 2013. PMID: 23064747 Free PMC article.

6

Landscape and variation of RNA secondary structure across the human transcriptome.

Wan Y, Qu K, Zhang QC, Flynn RA, Manor O, Ouyang Z, Zhang J, Spitale RC, Snyder MP, Segal E, Chang HY. Wan Y, et al. Among authors: ouyang z. Nature. 2014 Jan 30;505(7485):706-9. doi: 10.1038/nature12946. Nature. 2014. PMID: 24476892 Free PMC article.

7

HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure.

Zou C, Zhang Y, Ouyang Z. Zou C, et al. Among authors: ouyang z. Genome Biol. 2016 Mar 2;17:40. doi: 10.1186/s13059-016-0896-1. Genome Biol. 2016. PMID: 26936376 Free PMC article.

8

Joint principal trend analysis for longitudinal high-dimensional data.

Zhang Y, Ouyang Z. Zhang Y, et al. Among authors: ouyang z. Biometrics. 2018 Jun;74(2):430-438. doi: 10.1111/biom.12751. Epub 2017 Jul 31. Biometrics. 2018. PMID: 28759699

9

LISA: Accurate reconstruction of cell trajectory and pseudo-time for massive single cell RNA-seq data.

Chen Y, Zhang Y, Ouyang Z. Chen Y, et al. Among authors: ouyang z. Pac Symp Biocomput. 2019;24:338-349. Pac Symp Biocomput. 2019. PMID: 30864335 Free PMC article.

10

A STATISTICAL FRAMEWORK FOR DATA INTEGRATION THROUGH GRAPHICAL MODELS WITH APPLICATION TO CANCER GENOMICS.

Zhang Y, Ouyang Z, Zhao H. Zhang Y, et al. Among authors: ouyang z. Ann Appl Stat. 2017 Mar;11(1):161-184. doi: 10.1214/16-AOAS998. Epub 2017 Apr 8. Ann Appl Stat. 2017. PMID: 30956747 Free PMC article.

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