Patwardhan RP - Search Results

1

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions.

Burton JN, Adey A, Patwardhan RP, Qiu R, Kitzman JO, Shendure J. Burton JN, et al. Among authors: patwardhan rp. Nat Biotechnol. 2013 Dec;31(12):1119-25. doi: 10.1038/nbt.2727. Epub 2013 Nov 3. Nat Biotechnol. 2013. PMID: 24185095 Free PMC article.

2

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis.

Patwardhan RP, Lee C, Litvin O, Young DL, Pe'er D, Shendure J. Patwardhan RP, et al. Nat Biotechnol. 2009 Dec;27(12):1173-5. doi: 10.1038/nbt.1589. Nat Biotechnol. 2009. PMID: 19915551 Free PMC article.

3

Parallel, tag-directed assembly of locally derived short sequence reads.

Hiatt JB, Patwardhan RP, Turner EH, Lee C, Shendure J. Hiatt JB, et al. Among authors: patwardhan rp. Nat Methods. 2010 Feb;7(2):119-22. doi: 10.1038/nmeth.1416. Epub 2010 Jan 17. Nat Methods. 2010. PMID: 20081835 Free PMC article.

4

Haplotype-resolved genome sequencing of a Gujarati Indian individual.

Kitzman JO, Mackenzie AP, Adey A, Hiatt JB, Patwardhan RP, Sudmant PH, Ng SB, Alkan C, Qiu R, Eichler EE, Shendure J. Kitzman JO, et al. Among authors: patwardhan rp. Nat Biotechnol. 2011 Jan;29(1):59-63. doi: 10.1038/nbt.1740. Epub 2010 Dec 19. Nat Biotechnol. 2011. PMID: 21170042 Free PMC article.

5

The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae).

Soza VL, Lindsley D, Waalkes A, Ramage E, Patwardhan RP, Burton JN, Adey A, Kumar A, Qiu R, Shendure J, Hall B. Soza VL, et al. Among authors: patwardhan rp. Genome Biol Evol. 2019 Dec 1;11(12):3353-3371. doi: 10.1093/gbe/evz245. Genome Biol Evol. 2019. PMID: 31702783 Free PMC article.

6

Massively parallel functional dissection of mammalian enhancers in vivo.

Patwardhan RP, Hiatt JB, Witten DM, Kim MJ, Smith RP, May D, Lee C, Andrie JM, Lee SI, Cooper GM, Ahituv N, Pennacchio LA, Shendure J. Patwardhan RP, et al. Nat Biotechnol. 2012 Feb 26;30(3):265-70. doi: 10.1038/nbt.2136. Nat Biotechnol. 2012. PMID: 22371081 Free PMC article.

7

Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model.

Smith RP, Taher L, Patwardhan RP, Kim MJ, Inoue F, Shendure J, Ovcharenko I, Ahituv N. Smith RP, et al. Among authors: patwardhan rp. Nat Genet. 2013 Sep;45(9):1021-1028. doi: 10.1038/ng.2713. Epub 2013 Jul 28. Nat Genet. 2013. PMID: 23892608 Free PMC article.

8

Learning the sequence determinants of alternative splicing from millions of random sequences.

Rosenberg AB, Patwardhan RP, Shendure J, Seelig G. Rosenberg AB, et al. Among authors: patwardhan rp. Cell. 2015 Oct 22;163(3):698-711. doi: 10.1016/j.cell.2015.09.054. Epub 2015 Oct 22. Cell. 2015. PMID: 26496609 Free article.

9

Systematic dissection of coding exons at single nucleotide resolution supports an additional role in cell-specific transcriptional regulation.

Birnbaum RY, Patwardhan RP, Kim MJ, Findlay GM, Martin B, Zhao J, Bell RJ, Smith RP, Ku AA, Shendure J, Ahituv N. Birnbaum RY, et al. Among authors: patwardhan rp. PLoS Genet. 2014 Oct 23;10(10):e1004592. doi: 10.1371/journal.pgen.1004592. eCollection 2014 Oct. PLoS Genet. 2014. PMID: 25340400 Free PMC article.

10

Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function.

Costello JC, Dalkilic MM, Beason SM, Gehlhausen JR, Patwardhan R, Middha S, Eads BD, Andrews JR. Costello JC, et al. Genome Biol. 2009;10(9):R97. doi: 10.1186/gb-2009-10-9-r97. Epub 2009 Sep 16. Genome Biol. 2009. PMID: 19758432 Free PMC article.

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