Zou X - Search Results

1

Inclusion of the orientational entropic effect and low-resolution experimental information for protein-protein docking in Critical Assessment of PRedicted Interactions (CAPRI).

Huang SY, Yan C, Grinter SZ, Chang S, Jiang L, Zou X. Huang SY, et al. Among authors: zou x. Proteins. 2013 Dec;81(12):2183-91. doi: 10.1002/prot.24435. Epub 2013 Nov 14. Proteins. 2013. PMID: 24227686 Free PMC article.

2

An iterative knowledge-based scoring function to predict protein-ligand interactions: II. Validation of the scoring function.

Huang SY, Zou X. Huang SY, et al. Among authors: zou x. J Comput Chem. 2006 Nov 30;27(15):1876-82. doi: 10.1002/jcc.20505. J Comput Chem. 2006. PMID: 16983671

3

An iterative knowledge-based scoring function to predict protein-ligand interactions: I. Derivation of interaction potentials.

Huang SY, Zou X. Huang SY, et al. Among authors: zou x. J Comput Chem. 2006 Nov 30;27(15):1866-75. doi: 10.1002/jcc.20504. J Comput Chem. 2006. PMID: 16983673

4

Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.

Huang SY, Zou X. Huang SY, et al. Among authors: zou x. Proteins. 2007 Feb 1;66(2):399-421. doi: 10.1002/prot.21214. Proteins. 2007. PMID: 17096427

5

Efficient molecular docking of NMR structures: application to HIV-1 protease.

Huang SY, Zou X. Huang SY, et al. Among authors: zou x. Protein Sci. 2007 Jan;16(1):43-51. doi: 10.1110/ps.062501507. Epub 2006 Nov 22. Protein Sci. 2007. PMID: 17123961 Free PMC article.

6

An iterative knowledge-based scoring function for protein-protein recognition.

Huang SY, Zou X. Huang SY, et al. Among authors: zou x. Proteins. 2008 Aug;72(2):557-79. doi: 10.1002/prot.21949. Proteins. 2008. PMID: 18247354

7

Interactions between PBEF and oxidative stress proteins--a potential new mechanism underlying PBEF in the pathogenesis of acute lung injury.

Zhang LQ, Adyshev DM, Singleton P, Li H, Cepeda J, Huang SY, Zou X, Verin AD, Tu J, Garcia JG, Ye SQ. Zhang LQ, et al. Among authors: zou x. FEBS Lett. 2008 Jun 11;582(13):1802-8. doi: 10.1016/j.febslet.2008.04.061. Epub 2008 May 16. FEBS Lett. 2008. PMID: 18486613 Free PMC article.

8

Cutoff variation induces different topological properties: a new discovery of amino acid network within protein.

Yu T, Zou X, Huang SY, Zou XW. Yu T, et al. Among authors: zou x, zou xw. J Theor Biol. 2009 Feb 7;256(3):408-13. doi: 10.1016/j.jtbi.2008.09.042. Epub 2008 Nov 1. J Theor Biol. 2009. PMID: 19014959

9

Molecular modeling of the heterodimer of human CFTR's nucleotide-binding domains using a protein-protein docking approach.

Huang SY, Bolser D, Liu HY, Hwang TC, Zou X. Huang SY, et al. Among authors: zou x. J Mol Graph Model. 2009 Apr;27(7):822-8. doi: 10.1016/j.jmgm.2008.12.005. Epub 2008 Dec 24. J Mol Graph Model. 2009. PMID: 19167254 Free PMC article.

10

Multiscale generalized born modeling of ligand binding energies for virtual database screening.

Liu HY, Grinter SZ, Zou X. Liu HY, et al. Among authors: zou x. J Phys Chem B. 2009 Sep 3;113(35):11793-9. doi: 10.1021/jp901212t. J Phys Chem B. 2009. PMID: 19678651 Free PMC article.

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