Shi W - Search Results

1

Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain.

Dagley LF, White CA, Liao Y, Shi W, Smyth GK, Orian JM, Emili A, Purcell AW. Dagley LF, et al. Among authors: shi w. Proteomics. 2014 Feb;14(2-3):241-61. doi: 10.1002/pmic.201300196. Epub 2014 Jan 6. Proteomics. 2014. PMID: 24259518

2

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote.

Liao Y, Smyth GK, Shi W. Liao Y, et al. Among authors: shi w. Nucleic Acids Res. 2013 May 1;41(10):e108. doi: 10.1093/nar/gkt214. Epub 2013 Apr 4. Nucleic Acids Res. 2013. PMID: 23558742 Free PMC article.

3

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

Liao Y, Smyth GK, Shi W. Liao Y, et al. Among authors: shi w. Bioinformatics. 2014 Apr 1;30(7):923-30. doi: 10.1093/bioinformatics/btt656. Epub 2013 Nov 13. Bioinformatics. 2014. PMID: 24227677

4

The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads.

Liao Y, Smyth GK, Shi W. Liao Y, et al. Among authors: shi w. Nucleic Acids Res. 2019 May 7;47(8):e47. doi: 10.1093/nar/gkz114. Nucleic Acids Res. 2019. PMID: 30783653 Free PMC article.

5

Aliskiren increases bradykinin and tissue kallikrein mRNA levels in the heart.

Campbell DJ, Zhang Y, Kelly DJ, Gilbert RE, McCarthy DJ, Shi W, Smyth GK. Campbell DJ, et al. Among authors: shi w. Clin Exp Pharmacol Physiol. 2011 Sep;38(9):623-31. doi: 10.1111/j.1440-1681.2011.05572.x. Clin Exp Pharmacol Physiol. 2011. PMID: 21736602

6

Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells.

Shi W, Liao Y, Willis SN, Taubenheim N, Inouye M, Tarlinton DM, Smyth GK, Hodgkin PD, Nutt SL, Corcoran LM. Shi W, et al. Nat Immunol. 2015 Jun;16(6):663-73. doi: 10.1038/ni.3154. Epub 2015 Apr 20. Nat Immunol. 2015. PMID: 25894659

7

Whole transcriptome analysis for T cell receptor-affinity and IRF4-regulated clonal expansion of T cells.

Shi W, Man K, Smyth GK, Nutt SL, Kallies A. Shi W, et al. Genom Data. 2014 Nov 1;2:396-8. doi: 10.1016/j.gdata.2014.10.019. eCollection 2014 Dec. Genom Data. 2014. PMID: 26484137 Free PMC article.

8

An update on using CRISPR/Cas9 in the one-cell stage mouse embryo for generating complex mutant alleles.

Kueh AJ, Pal M, Tai L, Liao Y, Smyth GK, Shi W, Herold MJ. Kueh AJ, et al. Among authors: shi w. Cell Death Differ. 2017 Oct;24(10):1821-1822. doi: 10.1038/cdd.2017.122. Epub 2017 Jul 28. Cell Death Differ. 2017. PMID: 28753205 Free PMC article. No abstract available.

9

Blimp-1 controls plasma cell function through the regulation of immunoglobulin secretion and the unfolded protein response.

Tellier J, Shi W, Minnich M, Liao Y, Crawford S, Smyth GK, Kallies A, Busslinger M, Nutt SL. Tellier J, et al. Among authors: shi w. Nat Immunol. 2016 Mar;17(3):323-30. doi: 10.1038/ni.3348. Epub 2016 Jan 18. Nat Immunol. 2016. PMID: 26779600 Free PMC article.

10

Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips.

Shi W, Oshlack A, Smyth GK. Shi W, et al. Nucleic Acids Res. 2010 Dec;38(22):e204. doi: 10.1093/nar/gkq871. Epub 2010 Oct 6. Nucleic Acids Res. 2010. PMID: 20929874 Free PMC article.

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