Salehzadeh-Yazdi A - Search Results

1

Controllability in cancer metabolic networks according to drug targets as driver nodes.

Asgari Y, Salehzadeh-Yazdi A, Schreiber F, Masoudi-Nejad A. Asgari Y, et al. PLoS One. 2013 Nov 25;8(11):e79397. doi: 10.1371/journal.pone.0079397. eCollection 2013. PLoS One. 2013. PMID: 24282504 Free PMC article.

2

Computational analysis of RNA-protein interaction interfaces via the Voronoi diagram.

Mahdavi S, Mohades A, Salehzadeh Yazdi A, Jahandideh S, Masoudi-Nejad A. Mahdavi S, et al. J Theor Biol. 2012 Jan 21;293:55-64. doi: 10.1016/j.jtbi.2011.09.033. Epub 2011 Oct 10. J Theor Biol. 2012. PMID: 22004995

3

CytoKavosh: a cytoscape plug-in for finding network motifs in large biological networks.

Masoudi-Nejad A, Ansariola M, Kashani ZR, Salehzadeh-Yazdi A, Khakabimamaghani S. Masoudi-Nejad A, et al. PLoS One. 2012;7(8):e43287. doi: 10.1371/journal.pone.0043287. Epub 2012 Aug 29. PLoS One. 2012. PMID: 22952659 Free PMC article.

4

HomoTarget: a new algorithm for prediction of microRNA targets in Homo sapiens.

Ahmadi H, Ahmadi A, Azimzadeh-Jamalkandi S, Shoorehdeli MA, Salehzadeh-Yazdi A, Bidkhori G, Masoudi-Nejad A. Ahmadi H, et al. Genomics. 2013 Feb;101(2):94-100. doi: 10.1016/j.ygeno.2012.11.005. Epub 2012 Nov 19. Genomics. 2013. PMID: 23174671 Free article.

5

Computational structure analysis of biomacromolecule complexes by interface geometry.

Mahdavi S, Salehzadeh-Yazdi A, Mohades A, Masoudi-Nejad A. Mahdavi S, et al. Comput Biol Chem. 2013 Dec;47:16-23. doi: 10.1016/j.compbiolchem.2013.06.003. Epub 2013 Jun 25. Comput Biol Chem. 2013. PMID: 23850846

6

Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach.

Salehzadeh-Yazdi A, Asgari Y, Saboury AA, Masoudi-Nejad A. Salehzadeh-Yazdi A, et al. PLoS One. 2014 Nov 3;9(11):e111686. doi: 10.1371/journal.pone.0111686. eCollection 2014. PLoS One. 2014. PMID: 25365344 Free PMC article.

7

Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation.

Asgari Y, Zabihinpour Z, Salehzadeh-Yazdi A, Schreiber F, Masoudi-Nejad A. Asgari Y, et al. Genomics. 2015 May;105(5-6):275-81. doi: 10.1016/j.ygeno.2015.03.001. Epub 2015 Mar 13. Genomics. 2015. PMID: 25773945 Free article.

8

CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis.

Jalili M, Salehzadeh-Yazdi A, Asgari Y, Arab SS, Yaghmaie M, Ghavamzadeh A, Alimoghaddam K. Jalili M, et al. PLoS One. 2015 Nov 16;10(11):e0143111. doi: 10.1371/journal.pone.0143111. eCollection 2015. PLoS One. 2015. PMID: 26571275 Free PMC article.

9

GEMtractor: extracting views into genome-scale metabolic models.

Scharm M, Wolkenhauer O, Jalili M, Salehzadeh-Yazdi A. Scharm M, et al. Bioinformatics. 2020 May 1;36(10):3281-3282. doi: 10.1093/bioinformatics/btaa068. Bioinformatics. 2020. PMID: 32003785

10

Metabolic function-based normalization improves transcriptome data-driven reduction of genome-scale metabolic models.

Jalili M, Scharm M, Wolkenhauer O, Salehzadeh-Yazdi A. Jalili M, et al. Among authors: salehzadeh yazdi a. NPJ Syst Biol Appl. 2023 May 20;9(1):15. doi: 10.1038/s41540-023-00281-w. NPJ Syst Biol Appl. 2023. PMID: 37210409 Free PMC article.

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