Zhang Y - Search Results

1

Multi-core CPU or GPU-accelerated Multiscale Modeling for Biomolecular Complexes.

Liao T, Zhang Y, Kekenes-Huskey PM, Cheng Y, Michailova A, McCulloch AD, Holst M, McCammon JA. Liao T, et al. Among authors: zhang y. Mol Based Math Biol. 2013 Jul;1:10.2478/mlbmb-2013-0009. doi: 10.2478/mlbmb-2013-0009. Mol Based Math Biol. 2013. PMID: 24352481 Free PMC article.

2

Molecular and subcellular-scale modeling of nucleotide diffusion in the cardiac myofilament lattice.

Kekenes-Huskey PM, Liao T, Gillette AK, Hake JE, Zhang Y, Michailova AP, McCulloch AD, McCammon JA. Kekenes-Huskey PM, et al. Among authors: zhang y. Biophys J. 2013 Nov 5;105(9):2130-40. doi: 10.1016/j.bpj.2013.09.020. Biophys J. 2013. PMID: 24209858 Free PMC article.

3

Finite element analysis of the time-dependent Smoluchowski equation for acetylcholinesterase reaction rate calculations.

Cheng Y, Suen JK, Zhang D, Bond SD, Zhang Y, Song Y, Baker NA, Bajaj CL, Holst MJ, McCammon JA. Cheng Y, et al. Among authors: zhang d, zhang y. Biophys J. 2007 May 15;92(10):3397-406. doi: 10.1529/biophysj.106.102533. Epub 2007 Feb 16. Biophys J. 2007. PMID: 17307827 Free PMC article.

4

Diffusional channeling in the sulfate-activating complex: combined continuum modeling and coarse-grained brownian dynamics studies.

Cheng Y, Chang CE, Yu Z, Zhang Y, Sun M, Leyh TS, Holst MJ, McCammon JA. Cheng Y, et al. Among authors: zhang y. Biophys J. 2008 Nov 15;95(10):4659-67. doi: 10.1529/biophysj.108.140038. Epub 2008 Aug 8. Biophys J. 2008. PMID: 18689458 Free PMC article.

5

An atlas-based geometry pipeline for cardiac Hermite model construction and diffusion tensor reorientation.

Zhang Y, Liang X, Ma J, Jing Y, Gonzales MJ, Villongco C, Krishnamurthy A, Frank LR, Nigam V, Stark P, Narayan SM, McCulloch AD. Zhang Y, et al. Med Image Anal. 2012 Aug;16(6):1130-41. doi: 10.1016/j.media.2012.06.005. Epub 2012 Jul 6. Med Image Anal. 2012. PMID: 22841777 Free PMC article.

6

A three-dimensional finite element model of human atrial anatomy: new methods for cubic Hermite meshes with extraordinary vertices.

Gonzales MJ, Sturgeon G, Krishnamurthy A, Hake J, Jonas R, Stark P, Rappel WJ, Narayan SM, Zhang Y, Segars WP, McCulloch AD. Gonzales MJ, et al. Among authors: zhang y. Med Image Anal. 2013 Jul;17(5):525-37. doi: 10.1016/j.media.2013.03.005. Epub 2013 Mar 21. Med Image Anal. 2013. PMID: 23602918 Free PMC article.

7

Tetrameric mouse acetylcholinesterase: continuum diffusion rate calculations by solving the steady-state Smoluchowski equation using finite element methods.

Zhang D, Suen J, Zhang Y, Song Y, Radic Z, Taylor P, Holst MJ, Bajaj C, Baker NA, McCammon JA. Zhang D, et al. Among authors: zhang y. Biophys J. 2005 Mar;88(3):1659-65. doi: 10.1529/biophysj.104.053850. Epub 2004 Dec 30. Biophys J. 2005. PMID: 15626705 Free PMC article.

8

Finite element solution of the steady-state Smoluchowski equation for rate constant calculations.

Song Y, Zhang Y, Shen T, Bajaj CL, McCammon JA, Baker NA. Song Y, et al. Among authors: zhang y. Biophys J. 2004 Apr;86(4):2017-29. doi: 10.1016/S0006-3495(04)74263-0. Biophys J. 2004. PMID: 15041644 Free PMC article.

9

Dynamic lung modeling and tumor tracking using deformable image registration and geometric smoothing.

Zhang Y, Jing Y, Liang X, Xu G, Dong L. Zhang Y, et al. Mol Cell Biomech. 2012 Sep;9(3):213-26. Mol Cell Biomech. 2012. PMID: 23285735

10

An Automatic 3D Mesh Generation Method for Domains with Multiple Materials.

Zhang Y, Hughes TJ, Bajaj CL. Zhang Y, et al. Comput Methods Appl Mech Eng. 2010 Jan 1;199(5-8):405-415. doi: 10.1016/j.cma.2009.06.007. Comput Methods Appl Mech Eng. 2010. PMID: 20161555 Free PMC article.

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