Foley BL - Search Results

1

Importance of ligand conformational energies in carbohydrate docking: Sorting the wheat from the chaff.

Nivedha AK, Makeneni S, Foley BL, Tessier MB, Woods RJ. Nivedha AK, et al. Among authors: foley bl. J Comput Chem. 2014 Mar 15;35(7):526-39. doi: 10.1002/jcc.23517. Epub 2013 Dec 29. J Comput Chem. 2014. PMID: 24375430 Free PMC article.

2

Carbohydrate force fields.

Foley BL, Tessier MB, Woods RJ. Foley BL, et al. Wiley Interdiscip Rev Comput Mol Sci. 2012 Jul;2(4):652-697. doi: 10.1002/wcms.89. Wiley Interdiscip Rev Comput Mol Sci. 2012. PMID: 25530813 Free PMC article.

3

Combining 3D structure with glycan array data provides insight into the origin of glycan specificity.

Grant OC, Tessier MB, Meche L, Mahal LK, Foley BL, Woods RJ. Grant OC, et al. Among authors: foley bl. Glycobiology. 2016 Jul;26(7):772-783. doi: 10.1093/glycob/cww020. Epub 2016 Feb 23. Glycobiology. 2016. PMID: 26911287 Free PMC article.

4

GAG Builder: a web-tool for modeling 3D structures of glycosaminoglycans.

Singh A, Montgomery D, Xue X, Foley BL, Woods RJ. Singh A, et al. Among authors: foley bl. Glycobiology. 2019 Jul 1;29(7):515-518. doi: 10.1093/glycob/cwz027. Glycobiology. 2019. PMID: 31034567 Free PMC article.

5

GLYCAM06: a generalizable biomolecular force field. Carbohydrates.

Kirschner KN, Yongye AB, Tschampel SM, González-Outeiriño J, Daniels CR, Foley BL, Woods RJ. Kirschner KN, et al. Among authors: foley bl. J Comput Chem. 2008 Mar;29(4):622-55. doi: 10.1002/jcc.20820. J Comput Chem. 2008. PMID: 17849372 Free PMC article.

6

On achieving experimental accuracy from molecular dynamics simulations of flexible molecules: aqueous glycerol.

Yongye AB, Foley BL, Woods RJ. Yongye AB, et al. Among authors: foley bl. J Phys Chem A. 2008 Mar 27;112(12):2634-9. doi: 10.1021/jp710544s. Epub 2008 Mar 1. J Phys Chem A. 2008. PMID: 18311953 Free PMC article.

7

Involvement of water in carbohydrate-protein binding: concanavalin A revisited.

Kadirvelraj R, Foley BL, Dyekjaer JD, Woods RJ. Kadirvelraj R, et al. Among authors: foley bl. J Am Chem Soc. 2008 Dec 17;130(50):16933-42. doi: 10.1021/ja8039663. J Am Chem Soc. 2008. PMID: 19053475 Free PMC article.

8

BFMP: a method for discretizing and visualizing pyranose conformations.

Makeneni S, Foley BL, Woods RJ. Makeneni S, et al. Among authors: foley bl. J Chem Inf Model. 2014 Oct 27;54(10):2744-50. doi: 10.1021/ci500325b. Epub 2014 Oct 7. J Chem Inf Model. 2014. PMID: 25289680 Free PMC article.

9

Direct NOE simulation from long MD trajectories.

Chalmers G, Glushka JN, Foley BL, Woods RJ, Prestegard JH. Chalmers G, et al. Among authors: foley bl. J Magn Reson. 2016 Apr;265:1-9. doi: 10.1016/j.jmr.2016.01.006. Epub 2016 Jan 21. J Magn Reson. 2016. PMID: 26826977 Free PMC article.

10

Understanding the bacterial polysaccharide antigenicity of Streptococcus agalactiae versus Streptococcus pneumoniae.

Kadirvelraj R, Gonzalez-Outeiriño J, Foley BL, Beckham ML, Jennings HJ, Foote S, Ford MG, Woods RJ. Kadirvelraj R, et al. Among authors: foley bl. Proc Natl Acad Sci U S A. 2006 May 23;103(21):8149-54. doi: 10.1073/pnas.0602815103. Epub 2006 May 16. Proc Natl Acad Sci U S A. 2006. PMID: 16705032 Free PMC article.

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