Shapiro BA - Search Results

1

Genomic analyses reveal broad impact of miR-137 on genes associated with malignant transformation and neuronal differentiation in glioblastoma cells.

Tamim S, Vo DT, Uren PJ, Qiao M, Bindewald E, Kasprzak WK, Shapiro BA, Nakaya HI, Burns SC, Araujo PR, Nakano I, Radek AJ, Kuersten S, Smith AD, Penalva LO. Tamim S, et al. Among authors: shapiro ba. PLoS One. 2014 Jan 22;9(1):e85591. doi: 10.1371/journal.pone.0085591. eCollection 2014. PLoS One. 2014. PMID: 24465609 Free PMC article.

2

STRUCTURELAB: a heterogeneous bioinformatics system for RNA structure analysis.

Shapiro BA, Kasprzak W. Shapiro BA, et al. J Mol Graph. 1996 Aug;14(4):194-205, 222-4. doi: 10.1016/s0263-7855(96)00063-x. J Mol Graph. 1996. PMID: 9076633

3

Stem Trace: an interactive visual tool for comparative RNA structure analysis.

Kasprzak W, Shapiro B. Kasprzak W, et al. Bioinformatics. 1999 Jan;15(1):16-31. doi: 10.1093/bioinformatics/15.1.16. Bioinformatics. 1999. PMID: 10068689

4

RNA folding pathway functional intermediates: their prediction and analysis.

Shapiro BA, Bengali D, Kasprzak W, Wu JC. Shapiro BA, et al. J Mol Biol. 2001 Sep 7;312(1):27-44. doi: 10.1006/jmbi.2001.4931. J Mol Biol. 2001. PMID: 11545583

5

Structural differentiation of the HIV-1 polyA signals.

Gee AH, Kasprzak W, Shapiro BA. Gee AH, et al. Among authors: shapiro ba. J Biomol Struct Dyn. 2006 Feb;23(4):417-28. doi: 10.1080/07391102.2006.10531236. J Biomol Struct Dyn. 2006. PMID: 16363877 Free article.

6

Structural polymorphism of the HIV-1 leader region explored by computational methods.

Kasprzak W, Bindewald E, Shapiro BA. Kasprzak W, et al. Among authors: shapiro ba. Nucleic Acids Res. 2005 Dec 20;33(22):7151-63. doi: 10.1093/nar/gki1015. Print 2005. Nucleic Acids Res. 2005. PMID: 16371347 Free PMC article.

7

RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers.

Bindewald E, Shapiro BA. Bindewald E, et al. Among authors: shapiro ba. RNA. 2006 Mar;12(3):342-52. doi: 10.1261/rna.2164906. RNA. 2006. PMID: 16495232 Free PMC article.

8

Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm.

Shapiro BA, Kasprzak W, Grunewald C, Aman J. Shapiro BA, et al. J Mol Graph Model. 2006 Dec;25(4):514-31. doi: 10.1016/j.jmgm.2006.04.004. Epub 2006 Apr 28. J Mol Graph Model. 2006. PMID: 16725358

9

The role of a metastable RNA secondary structure in hepatitis delta virus genotype III RNA editing.

Linnstaedt SD, Kasprzak WK, Shapiro BA, Casey JL. Linnstaedt SD, et al. Among authors: shapiro ba. RNA. 2006 Aug;12(8):1521-33. doi: 10.1261/rna.89306. Epub 2006 Jun 21. RNA. 2006. PMID: 16790843 Free PMC article.

10

CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments.

Bindewald E, Schneider TD, Shapiro BA. Bindewald E, et al. Among authors: shapiro ba. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W405-11. doi: 10.1093/nar/gkl269. Nucleic Acids Res. 2006. PMID: 16845037 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

233 results

Search Page

Filters