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Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach.
Meyer P, Cokelaer T, Chandran D, Kim KH, Loh PR, Tucker G, Lipson M, Berger B, Kreutz C, Raue A, Steiert B, Timmer J, Bilal E, Sauro HM, Stolovitzky G, Saez-Rodriguez J. Meyer P, et al. Among authors: timmer j. BMC Syst Biol. 2014 Feb 7;8:13. doi: 10.1186/1752-0509-8-13. BMC Syst Biol. 2014. PMID: 24507381 Free PMC article.
Parameter estimation in stochastic biochemical reactions.
Reinker S, Altman RM, Timmer J. Reinker S, et al. Among authors: timmer j. Syst Biol (Stevenage). 2006 Jul;153(4):168-78. doi: 10.1049/ip-syb:20050105. Syst Biol (Stevenage). 2006. PMID: 16986618
Primary mouse hepatocytes for systems biology approaches: a standardized in vitro system for modelling of signal transduction pathways.
Klingmüller U, Bauer A, Bohl S, Nickel PJ, Breitkopf K, Dooley S, Zellmer S, Kern C, Merfort I, Sparna T, Donauer J, Walz G, Geyer M, Kreutz C, Hermes M, Götschel F, Hecht A, Walter D, Egger L, Neubert K, Borner C, Brulport M, Schormann W, Sauer C, Baumann F, Preiss R, MacNelly S, Godoy P, Wiercinska E, Ciuclan L, Edelmann J, Zeilinger K, Heinrich M, Zanger UM, Gebhardt R, Maiwald T, Heinrich R, Timmer J, von Weizsäcker F, Hengstler JG. Klingmüller U, et al. Among authors: timmer j. Syst Biol (Stevenage). 2006 Nov;153(6):433-47. doi: 10.1049/ip-syb:20050067. Syst Biol (Stevenage). 2006. PMID: 17186705
An error model for protein quantification.
Kreutz C, Bartolome Rodriguez MM, Maiwald T, Seidl M, Blum HE, Mohr L, Timmer J. Kreutz C, et al. Among authors: timmer j. Bioinformatics. 2007 Oct 15;23(20):2747-53. doi: 10.1093/bioinformatics/btm397. Epub 2007 Sep 3. Bioinformatics. 2007. PMID: 17768165
469 results