He J - Search Results

1

Estimating loop length from CryoEM images at medium resolutions.

McKnight A, Si D, Al Nasr K, Chernikov A, Chrisochoides N, He J. McKnight A, et al. Among authors: he j. BMC Struct Biol. 2013;13 Suppl 1(Suppl 1):S5. doi: 10.1186/1472-6807-13-S1-S5. Epub 2013 Nov 8. BMC Struct Biol. 2013. PMID: 24565041 Free PMC article.

2

Structure prediction for the helical skeletons detected from the low resolution protein density map.

Al Nasr K, Sun W, He J. Al Nasr K, et al. Among authors: he j. BMC Bioinformatics. 2010 Jan 18;11 Suppl 1(Suppl 1):S44. doi: 10.1186/1471-2105-11-S1-S44. BMC Bioinformatics. 2010. PMID: 20122218 Free PMC article.

3

Tracing beta strands using StrandTwister from cryo-EM density maps at medium resolutions.

Si D, He J. Si D, et al. Among authors: he j. Structure. 2014 Nov 4;22(11):1665-76. doi: 10.1016/j.str.2014.08.017. Epub 2014 Oct 9. Structure. 2014. PMID: 25308866 Free article.

4

Combining image processing and modeling to generate traces of beta-strands from cryo-EM density images of beta-barrels.

Si D, He J. Si D, et al. Among authors: he j. Annu Int Conf IEEE Eng Med Biol Soc. 2014;2014:3941-4. doi: 10.1109/EMBC.2014.6944486. Annu Int Conf IEEE Eng Med Biol Soc. 2014. PMID: 25570854

5

Solving the Secondary Structure Matching Problem in Cryo-EM De Novo Modeling Using a Constrained K-Shortest Path Graph Algorithm.

Al Nasr K, Ranjan D, Zubair M, Chen L, He J. Al Nasr K, et al. Among authors: he j. IEEE/ACM Trans Comput Biol Bioinform. 2014 Mar-Apr;11(2):419-30. doi: 10.1109/TCBB.2014.2302803. IEEE/ACM Trans Comput Biol Bioinform. 2014. PMID: 26355788

6

Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps.

Si D, He J. Si D, et al. Among authors: he j. Biomed Res Int. 2017;2017:1793213. doi: 10.1155/2017/1793213. Epub 2017 Jan 10. Biomed Res Int. 2017. PMID: 28164115 Free PMC article.

7

An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent.

Al-Nasr K, He J. Al-Nasr K, et al. Among authors: he j. Int J Data Min Bioinform. 2009;3(3):346-61. doi: 10.1504/ijdmb.2009.026712. Int J Data Min Bioinform. 2009. PMID: 19623775

8

Intensity-based skeletonization of CryoEM gray-scale images using a true segmentation-free algorithm.

Al Nasr K, Liu C, Rwebangira M, Burge L, He J. Al Nasr K, et al. Among authors: he j. IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1289-98. doi: 10.1109/TCBB.2013.121. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24384713 Free PMC article.

9

Ranking valid topologies of the secondary structure elements using a constraint graph.

Al Nasr K, Ranjan D, Zubair M, He J. Al Nasr K, et al. Among authors: he j. J Bioinform Comput Biol. 2011 Jun;9(3):415-30. doi: 10.1142/s0219720011005604. J Bioinform Comput Biol. 2011. PMID: 21714133

10

Improved efficiency in cryo-EM secondary structure topology determination from inaccurate data.

Biswas A, Si D, Al Nasr K, Ranjan D, Zubair M, He J. Biswas A, et al. Among authors: he j. J Bioinform Comput Biol. 2012 Jun;10(3):1242006. doi: 10.1142/S0219720012420061. J Bioinform Comput Biol. 2012. PMID: 22809382

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