Kleinstein SH - Search Results

1

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.

Vander Heiden JA, Yaari G, Uduman M, Stern JN, O'Connor KC, Hafler DA, Vigneault F, Kleinstein SH. Vander Heiden JA, et al. Among authors: kleinstein sh. Bioinformatics. 2014 Jul 1;30(13):1930-2. doi: 10.1093/bioinformatics/btu138. Epub 2014 Mar 10. Bioinformatics. 2014. PMID: 24618469 Free PMC article.

2

Mutation parameters from DNA sequence data using graph theoretic measures on lineage trees.

Magori-Cohen R, Louzoun Y, Kleinstein SH. Magori-Cohen R, et al. Among authors: kleinstein sh. Bioinformatics. 2006 Jul 15;22(14):e332-40. doi: 10.1093/bioinformatics/btl239. Bioinformatics. 2006. PMID: 16873490

3

Improved methods for detecting selection by mutation analysis of Ig V region sequences.

Hershberg U, Uduman M, Shlomchik MJ, Kleinstein SH. Hershberg U, et al. Among authors: kleinstein sh. Int Immunol. 2008 May;20(5):683-94. doi: 10.1093/intimm/dxn026. Epub 2008 Apr 7. Int Immunol. 2008. PMID: 18397909

4

Taking advantage: high-affinity B cells in the germinal center have lower death rates, but similar rates of division, compared to low-affinity cells.

Anderson SM, Khalil A, Uduman M, Hershberg U, Louzoun Y, Haberman AM, Kleinstein SH, Shlomchik MJ. Anderson SM, et al. Among authors: kleinstein sh. J Immunol. 2009 Dec 1;183(11):7314-25. doi: 10.4049/jimmunol.0902452. Epub 2009 Nov 16. J Immunol. 2009. PMID: 19917681 Free PMC article.

5

Gene expression analysis of forskolin treated basilar papillae identifies microRNA181a as a mediator of proliferation.

Frucht CS, Uduman M, Duke JL, Kleinstein SH, Santos-Sacchi J, Navaratnam DS. Frucht CS, et al. Among authors: kleinstein sh. PLoS One. 2010 Jul 9;5(7):e11502. doi: 10.1371/journal.pone.0011502. PLoS One. 2010. PMID: 20634979 Free PMC article.

6

Gene expression gradients along the tonotopic axis of the chicken auditory epithelium.

Frucht CS, Uduman M, Kleinstein SH, Santos-Sacchi J, Navaratnam DS. Frucht CS, et al. Among authors: kleinstein sh. J Assoc Res Otolaryngol. 2011 Aug;12(4):423-35. doi: 10.1007/s10162-011-0259-2. Epub 2011 Mar 12. J Assoc Res Otolaryngol. 2011. PMID: 21399991 Free PMC article.

7

Germinal center B cell and T follicular helper cell development initiates in the interfollicular zone.

Kerfoot SM, Yaari G, Patel JR, Johnson KL, Gonzalez DG, Kleinstein SH, Haberman AM. Kerfoot SM, et al. Among authors: kleinstein sh. Immunity. 2011 Jun 24;34(6):947-60. doi: 10.1016/j.immuni.2011.03.024. Immunity. 2011. PMID: 21636295 Free PMC article.

8

Detecting selection in immunoglobulin sequences.

Uduman M, Yaari G, Hershberg U, Stern JA, Shlomchik MJ, Kleinstein SH. Uduman M, et al. Among authors: kleinstein sh. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W499-504. doi: 10.1093/nar/gkr413. Epub 2011 Jun 10. Nucleic Acids Res. 2011. PMID: 21665923 Free PMC article.

9

Cell subset prediction for blood genomic studies.

Bolen CR, Uduman M, Kleinstein SH. Bolen CR, et al. Among authors: kleinstein sh. BMC Bioinformatics. 2011 Jun 24;12:258. doi: 10.1186/1471-2105-12-258. BMC Bioinformatics. 2011. PMID: 21702940 Free PMC article.

10

Quantifying selection in high-throughput Immunoglobulin sequencing data sets.

Yaari G, Uduman M, Kleinstein SH. Yaari G, et al. Among authors: kleinstein sh. Nucleic Acids Res. 2012 Sep 1;40(17):e134. doi: 10.1093/nar/gks457. Epub 2012 May 27. Nucleic Acids Res. 2012. PMID: 22641856 Free PMC article.

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