Nesvizhskii AI - Search Results

1

Global phosphoproteomic profiling reveals distinct signatures in B-cell non-Hodgkin lymphomas.

Rolland D, Basrur V, Conlon K, Wolfe T, Fermin D, Nesvizhskii AI, Lim MS, Elenitoba-Johnson KS. Rolland D, et al. Among authors: nesvizhskii ai. Am J Pathol. 2014 May;184(5):1331-42. doi: 10.1016/j.ajpath.2014.01.036. Epub 2014 Mar 22. Am J Pathol. 2014. PMID: 24667141 Free PMC article.

2

Significance analysis of spectral count data in label-free shotgun proteomics.

Choi H, Fermin D, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2008 Dec;7(12):2373-85. doi: 10.1074/mcp.M800203-MCP200. Epub 2008 Jul 20. Mol Cell Proteomics. 2008. PMID: 18644780 Free PMC article.

3

Quantitative proteomic profiling of prostate cancer reveals a role for miR-128 in prostate cancer.

Khan AP, Poisson LM, Bhat VB, Fermin D, Zhao R, Kalyana-Sundaram S, Michailidis G, Nesvizhskii AI, Omenn GS, Chinnaiyan AM, Sreekumar A. Khan AP, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2010 Feb;9(2):298-312. doi: 10.1074/mcp.M900159-MCP200. Epub 2009 Nov 9. Mol Cell Proteomics. 2010. PMID: 19955085 Free PMC article.

4

Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets.

Ning K, Fermin D, Nesvizhskii AI. Ning K, et al. Among authors: nesvizhskii ai. Proteomics. 2010 Jul;10(14):2712-8. doi: 10.1002/pmic.200900473. Proteomics. 2010. PMID: 20455209 Free PMC article.

5

SAINT: probabilistic scoring of affinity purification-mass spectrometry data.

Choi H, Larsen B, Lin ZY, Breitkreutz A, Mellacheruvu D, Fermin D, Qin ZS, Tyers M, Gingras AC, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. Nat Methods. 2011 Jan;8(1):70-3. doi: 10.1038/nmeth.1541. Epub 2010 Dec 5. Nat Methods. 2011. PMID: 21131968 Free PMC article.

6

Abacus: a computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis.

Fermin D, Basrur V, Yocum AK, Nesvizhskii AI. Fermin D, et al. Among authors: nesvizhskii ai. Proteomics. 2011 Apr;11(7):1340-5. doi: 10.1002/pmic.201000650. Epub 2011 Feb 17. Proteomics. 2011. PMID: 21360675 Free PMC article.

7

Comparative analysis of different label-free mass spectrometry based protein abundance estimates and their correlation with RNA-Seq gene expression data.

Ning K, Fermin D, Nesvizhskii AI. Ning K, et al. Among authors: nesvizhskii ai. J Proteome Res. 2012 Apr 6;11(4):2261-71. doi: 10.1021/pr201052x. Epub 2012 Feb 29. J Proteome Res. 2012. PMID: 22329341 Free PMC article.

8

Sparsely correlated hidden Markov models with application to genome-wide location studies.

Choi H, Fermin D, Nesvizhskii AI, Ghosh D, Qin ZS. Choi H, et al. Among authors: nesvizhskii ai. Bioinformatics. 2013 Mar 1;29(5):533-41. doi: 10.1093/bioinformatics/btt012. Epub 2013 Jan 16. Bioinformatics. 2013. PMID: 23325620 Free PMC article.

9

Fusion peptides from oncogenic chimeric proteins as putative specific biomarkers of cancer.

Conlon KP, Basrur V, Rolland D, Wolfe T, Nesvizhskii AI, MacCoss MJ, Lim MS, Elenitoba-Johnson KS. Conlon KP, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2013 Oct;12(10):2714-23. doi: 10.1074/mcp.M113.029926. Epub 2013 Jul 8. Mol Cell Proteomics. 2013. PMID: 23836920 Free PMC article.

10

LuciPHOr: algorithm for phosphorylation site localization with false localization rate estimation using modified target-decoy approach.

Fermin D, Walmsley SJ, Gingras AC, Choi H, Nesvizhskii AI. Fermin D, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2013 Nov;12(11):3409-19. doi: 10.1074/mcp.M113.028928. Epub 2013 Aug 5. Mol Cell Proteomics. 2013. PMID: 23918812 Free PMC article.

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