Ogurtsov AY - Search Results

1

Evolution at protein ends: major contribution of alternative transcription initiation and termination to the transcriptome and proteome diversity in mammals.

Shabalina SA, Ogurtsov AY, Spiridonov NA, Koonin EV. Shabalina SA, et al. Among authors: ogurtsov ay. Nucleic Acids Res. 2014 Jun;42(11):7132-44. doi: 10.1093/nar/gku342. Epub 2014 May 3. Nucleic Acids Res. 2014. PMID: 24792168 Free PMC article.

2

Webb CT, Shabalina SA, Ogurtsov AY, Kondrashov AS. Webb CT, et al. Among authors: ogurtsov ay. Nucleic Acids Res. 2002 Mar 1;30(5):1233-9. doi: 10.1093/nar/30.5.1233. Nucleic Acids Res. 2002. PMID: 11861916 Free PMC article.

3

A hierarchical approach to aligning collinear regions of genomes.

Roytberg MA, Ogurtsov AY, Shabalina SA, Kondrashov AS. Roytberg MA, et al. Among authors: ogurtsov ay. Bioinformatics. 2002 Dec;18(12):1673-80. doi: 10.1093/bioinformatics/18.12.1673. Bioinformatics. 2002. PMID: 12490453

4

OWEN: aligning long collinear regions of genomes.

Ogurtsov AY, Roytberg MA, Shabalina SA, Kondrashov AS. Ogurtsov AY, et al. Bioinformatics. 2002 Dec;18(12):1703-4. doi: 10.1093/bioinformatics/18.12.1703. Bioinformatics. 2002. PMID: 12490463

5

Patterns in interspecies similarity correlate with nucleotide composition in mammalian 3'UTRs.

Shabalina SA, Ogurtsov AY, Lipman DJ, Kondrashov AS. Shabalina SA, et al. Among authors: ogurtsov ay. Nucleic Acids Res. 2003 Sep 15;31(18):5433-9. doi: 10.1093/nar/gkg751. Nucleic Acids Res. 2003. PMID: 12954780 Free PMC article.

6

Bioinformatical assay of human gene morbidity.

Kondrashov FA, Ogurtsov AY, Kondrashov AS. Kondrashov FA, et al. Among authors: ogurtsov ay. Nucleic Acids Res. 2004 Mar 12;32(5):1731-7. doi: 10.1093/nar/gkh330. Print 2004. Nucleic Acids Res. 2004. PMID: 15020709 Free PMC article.

7

Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals.

Shabalina SA, Ogurtsov AY, Rogozin IB, Koonin EV, Lipman DJ. Shabalina SA, et al. Among authors: ogurtsov ay. Nucleic Acids Res. 2004 Mar 18;32(5):1774-82. doi: 10.1093/nar/gkh313. Print 2004. Nucleic Acids Res. 2004. PMID: 15031317 Free PMC article.

8

Computational models with thermodynamic and composition features improve siRNA design.

Shabalina SA, Spiridonov AN, Ogurtsov AY. Shabalina SA, et al. Among authors: ogurtsov ay. BMC Bioinformatics. 2006 Feb 12;7:65. doi: 10.1186/1471-2105-7-65. BMC Bioinformatics. 2006. PMID: 16472402 Free PMC article.

9

Analysis of internal loops within the RNA secondary structure in almost quadratic time.

Ogurtsov AY, Shabalina SA, Kondrashov AS, Roytberg MA. Ogurtsov AY, et al. Bioinformatics. 2006 Jun 1;22(11):1317-24. doi: 10.1093/bioinformatics/btl083. Epub 2006 Mar 16. Bioinformatics. 2006. PMID: 16543280

10

A periodic pattern of mRNA secondary structure created by the genetic code.

Shabalina SA, Ogurtsov AY, Spiridonov NA. Shabalina SA, et al. Among authors: ogurtsov ay. Nucleic Acids Res. 2006 May 8;34(8):2428-37. doi: 10.1093/nar/gkl287. Print 2006. Nucleic Acids Res. 2006. PMID: 16682450 Free PMC article.

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