Bafna V - Search Results

1

The elusive evidence for chromothripsis.

Kinsella M, Patel A, Bafna V. Kinsella M, et al. Among authors: bafna v. Nucleic Acids Res. 2014 Jul;42(13):8231-42. doi: 10.1093/nar/gku525. Epub 2014 Jun 17. Nucleic Acids Res. 2014. PMID: 24939897 Free PMC article.

2

Expansion of the mycobacterial "PUPylome".

Watrous J, Burns K, Liu WT, Patel A, Hook V, Bafna V, Barry CE 3rd, Bark S, Dorrestein PC. Watrous J, et al. Among authors: bafna v. Mol Biosyst. 2010 Feb;6(2):376-85. doi: 10.1039/b916104j. Epub 2009 Nov 16. Mol Biosyst. 2010. PMID: 20094657 Free PMC article.

3

Practical 4'-phosphopantetheine active site discovery from proteomic samples.

Meier JL, Patel AD, Niessen S, Meehan M, Kersten R, Yang JY, Rothmann M, Cravatt BF, Dorrestein PC, Burkart MD, Bafna V. Meier JL, et al. Among authors: bafna v. J Proteome Res. 2011 Jan 7;10(1):320-9. doi: 10.1021/pr100953b. Epub 2010 Dec 13. J Proteome Res. 2011. PMID: 21067235 Free PMC article.

4

Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs.

Kinsella M, Harismendy O, Nakano M, Frazer KA, Bafna V. Kinsella M, et al. Among authors: bafna v. Bioinformatics. 2011 Apr 15;27(8):1068-75. doi: 10.1093/bioinformatics/btr085. Epub 2011 Feb 16. Bioinformatics. 2011. PMID: 21330288 Free PMC article.

5

Combinatorics of the breakage-fusion-bridge mechanism.

Kinsella M, Bafna V. Kinsella M, et al. Among authors: bafna v. J Comput Biol. 2012 Jun;19(6):662-78. doi: 10.1089/cmb.2012.0020. Epub 2012 Apr 16. J Comput Biol. 2012. PMID: 22506505 Free PMC article.

6

An algorithmic approach for breakage-fusion-bridge detection in tumor genomes.

Zakov S, Kinsella M, Bafna V. Zakov S, et al. Among authors: bafna v. Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5546-51. doi: 10.1073/pnas.1220977110. Epub 2013 Mar 15. Proc Natl Acad Sci U S A. 2013. PMID: 23503850 Free PMC article.

7

Reprever: resolving low-copy duplicated sequences using template driven assembly.

Kim S, Medvedev P, Paton TA, Bafna V. Kim S, et al. Among authors: bafna v. Nucleic Acids Res. 2013 Jul;41(12):e128. doi: 10.1093/nar/gkt339. Epub 2013 May 8. Nucleic Acids Res. 2013. PMID: 23658221 Free PMC article.

8

Virmid: accurate detection of somatic mutations with sample impurity inference.

Kim S, Jeong K, Bhutani K, Lee J, Patel A, Scott E, Nam H, Lee H, Gleeson JG, Bafna V. Kim S, et al. Among authors: bafna v. Genome Biol. 2013 Aug 29;14(8):R90. doi: 10.1186/gb-2013-14-8-r90. Genome Biol. 2013. PMID: 23987214 Free PMC article.

9

Amplification and thrifty single-molecule sequencing of recurrent somatic structural variations.

Patel A, Schwab R, Liu YT, Bafna V. Patel A, et al. Among authors: bafna v. Genome Res. 2014 Feb;24(2):318-28. doi: 10.1101/gr.161497.113. Epub 2013 Dec 4. Genome Res. 2014. PMID: 24307551 Free PMC article.

10

InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms.

Patel A, Edge P, Selvaraj S, Bansal V, Bafna V. Patel A, et al. Among authors: bafna v. Nucleic Acids Res. 2016 Jul 8;44(12):e111. doi: 10.1093/nar/gkw281. Epub 2016 Apr 21. Nucleic Acids Res. 2016. PMID: 27105843 Free PMC article.

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