Rydén P - Search Results

1

Immortalization of T-cells is accompanied by gradual changes in CpG methylation resulting in a profile resembling a subset of T-cell leukemias.

Degerman S, Landfors M, Siwicki JK, Revie J, Borssén M, Evelönn E, Forestier E, Chrzanowska KH, Rydén P, Keith WN, Roos G. Degerman S, et al. Among authors: ryden p. Neoplasia. 2014 Jul;16(7):606-15. doi: 10.1016/j.neo.2014.07.001. Epub 2014 Jul 22. Neoplasia. 2014. PMID: 25065939 Free PMC article.

2

Evaluation of microarray data normalization procedures using spike-in experiments.

Rydén P, Andersson H, Landfors M, Näslund L, Hartmanová B, Noppa L, Sjöstedt A. Rydén P, et al. BMC Bioinformatics. 2006 Jun 14;7:300. doi: 10.1186/1471-2105-7-300. BMC Bioinformatics. 2006. PMID: 16774679 Free PMC article.

3

Transcriptional profiling of the peripheral blood response during tularemia.

Andersson H, Hartmanová B, Bäck E, Eliasson H, Landfors M, Näslund L, Rydén P, Sjöstedt A. Andersson H, et al. Among authors: ryden p. Genes Immun. 2006 Sep;7(6):503-13. doi: 10.1038/sj.gene.6364321. Epub 2006 Jul 6. Genes Immun. 2006. PMID: 16826236

4

MC-normalization: a novel method for dye-normalization of two-channel microarray data.

Landfors M, Fahlén J, Rydén P. Landfors M, et al. Among authors: ryden p. Stat Appl Genet Mol Biol. 2009;8:Article 42. doi: 10.2202/1544-6115.1459. Epub 2009 Oct 1. Stat Appl Genet Mol Biol. 2009. PMID: 19799561

5

Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering.

Freyhult E, Landfors M, Önskog J, Hvidsten TR, Rydén P. Freyhult E, et al. Among authors: ryden p. BMC Bioinformatics. 2010 Oct 11;11:503. doi: 10.1186/1471-2105-11-503. BMC Bioinformatics. 2010. PMID: 20937082 Free PMC article.

6

Classification of microarrays; synergistic effects between normalization, gene selection and machine learning.

Önskog J, Freyhult E, Landfors M, Rydén P, Hvidsten TR. Önskog J, et al. Among authors: ryden p. BMC Bioinformatics. 2011 Oct 7;12:390. doi: 10.1186/1471-2105-12-390. BMC Bioinformatics. 2011. PMID: 21982277 Free PMC article.

7

Normalization of high dimensional genomics data where the distribution of the altered variables is skewed.

Landfors M, Philip P, Rydén P, Stenberg P. Landfors M, et al. Among authors: ryden p. PLoS One. 2011;6(11):e27942. doi: 10.1371/journal.pone.0027942. Epub 2011 Nov 22. PLoS One. 2011. PMID: 22132175 Free PMC article.

8

Pr is a member of a restricted class of σ70-dependent promoters that lack a recognizable -10 element.

Del Peso-Santos T, Landfors M, Skärfstad E, Ryden P, Shingler V. Del Peso-Santos T, et al. Among authors: ryden p. Nucleic Acids Res. 2012 Dec;40(22):11308-20. doi: 10.1093/nar/gks934. Epub 2012 Oct 11. Nucleic Acids Res. 2012. PMID: 23066105 Free PMC article.

9

Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma.

Andersson-Evelönn E, Vidman L, Källberg D, Landfors M, Liu X, Ljungberg B, Hultdin M, Rydén P, Degerman S. Andersson-Evelönn E, et al. Among authors: ryden p. J Transl Med. 2020 Nov 13;18(1):435. doi: 10.1186/s12967-020-02608-1. J Transl Med. 2020. PMID: 33187526 Free PMC article.

10

Gene expression profiles define molecular subtypes of prostate cancer bone metastases with different outcomes and morphology traceable back to the primary tumor.

Thysell E, Vidman L, Ylitalo EB, Jernberg E, Crnalic S, Iglesias-Gato D, Flores-Morales A, Stattin P, Egevad L, Widmark A, Rydén P, Bergh A, Wikström P. Thysell E, et al. Among authors: ryden p. Mol Oncol. 2019 Aug;13(8):1763-1777. doi: 10.1002/1878-0261.12526. Epub 2019 Jun 27. Mol Oncol. 2019. PMID: 31162796 Free PMC article.

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