Jaffe JD - Search Results

1

An unbiased approach to identify endogenous substrates of "histone" deacetylase 8.

Olson DE, Udeshi ND, Wolfson NA, Pitcairn CA, Sullivan ED, Jaffe JD, Svinkina T, Natoli T, Lu X, Paulk J, McCarren P, Wagner FF, Barker D, Howe E, Lazzaro F, Gale JP, Zhang YL, Subramanian A, Fierke CA, Carr SA, Holson EB. Olson DE, et al. Among authors: jaffe jd. ACS Chem Biol. 2014 Oct 17;9(10):2210-6. doi: 10.1021/cb500492r. Epub 2014 Aug 11. ACS Chem Biol. 2014. PMID: 25089360 Free PMC article.

2

PEPPeR, a platform for experimental proteomic pattern recognition.

Jaffe JD, Mani DR, Leptos KC, Church GM, Gillette MA, Carr SA. Jaffe JD, et al. Mol Cell Proteomics. 2006 Oct;5(10):1927-41. doi: 10.1074/mcp.M600222-MCP200. Epub 2006 Jul 19. Mol Cell Proteomics. 2006. PMID: 16857664 Free PMC article.

3

mSin1 is necessary for Akt/PKB phosphorylation, and its isoforms define three distinct mTORC2s.

Frias MA, Thoreen CC, Jaffe JD, Schroder W, Sculley T, Carr SA, Sabatini DM. Frias MA, et al. Among authors: jaffe jd. Curr Biol. 2006 Sep 19;16(18):1865-70. doi: 10.1016/j.cub.2006.08.001. Epub 2006 Aug 17. Curr Biol. 2006. PMID: 16919458 Free article.

4

Accurate inclusion mass screening: a bridge from unbiased discovery to targeted assay development for biomarker verification.

Jaffe JD, Keshishian H, Chang B, Addona TA, Gillette MA, Carr SA. Jaffe JD, et al. Mol Cell Proteomics. 2008 Oct;7(10):1952-62. doi: 10.1074/mcp.M800218-MCP200. Epub 2008 Jun 4. Mol Cell Proteomics. 2008. PMID: 18534968 Free PMC article.

5

Directed sample interrogation utilizing an accurate mass exclusion-based data-dependent acquisition strategy (AMEx).

Rudomin EL, Carr SA, Jaffe JD. Rudomin EL, et al. Among authors: jaffe jd. J Proteome Res. 2009 Jun;8(6):3154-60. doi: 10.1021/pr801017a. J Proteome Res. 2009. PMID: 19344186 Free PMC article.

6

iTRAQ labeling is superior to mTRAQ for quantitative global proteomics and phosphoproteomics.

Mertins P, Udeshi ND, Clauser KR, Mani DR, Patel J, Ong SE, Jaffe JD, Carr SA. Mertins P, et al. Among authors: jaffe jd. Mol Cell Proteomics. 2012 Jun;11(6):M111.014423. doi: 10.1074/mcp.M111.014423. Epub 2011 Dec 30. Mol Cell Proteomics. 2012. PMID: 22210691 Free PMC article.

7

STK33 kinase inhibitor BRD-8899 has no effect on KRAS-dependent cancer cell viability.

Luo T, Masson K, Jaffe JD, Silkworth W, Ross NT, Scherer CA, Scholl C, Fröhling S, Carr SA, Stern AM, Schreiber SL, Golub TR. Luo T, et al. Among authors: jaffe jd. Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2860-5. doi: 10.1073/pnas.1120589109. Epub 2012 Feb 9. Proc Natl Acad Sci U S A. 2012. PMID: 22323609 Free PMC article.

8

Quantitative assessment of chromatin immunoprecipitation grade antibodies directed against histone modifications reveals patterns of co-occurring marks on histone protein molecules.

Peach SE, Rudomin EL, Udeshi ND, Carr SA, Jaffe JD. Peach SE, et al. Among authors: jaffe jd. Mol Cell Proteomics. 2012 May;11(5):128-37. doi: 10.1074/mcp.M111.015941. Epub 2012 Mar 21. Mol Cell Proteomics. 2012. PMID: 22442256 Free PMC article.

9

Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.

Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA. Udeshi ND, et al. Among authors: jaffe jd. Mol Cell Proteomics. 2012 May;11(5):148-59. doi: 10.1074/mcp.M111.016857. Epub 2012 Apr 14. Mol Cell Proteomics. 2012. PMID: 22505724 Free PMC article.

10

Integrated proteomic analysis of post-translational modifications by serial enrichment.

Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA. Mertins P, et al. Among authors: jaffe jd. Nat Methods. 2013 Jul;10(7):634-7. doi: 10.1038/nmeth.2518. Epub 2013 Jun 9. Nat Methods. 2013. PMID: 23749302 Free PMC article.

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