Vijay-Shanker K - Search Results

1

A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems.

Peng Y, Torii M, Wu CH, Vijay-Shanker K. Peng Y, et al. BMC Bioinformatics. 2014 Aug 23;15(1):285. doi: 10.1186/1471-2105-15-285. BMC Bioinformatics. 2014. PMID: 25149151 Free PMC article.

2

Using name-internal and contextual features to classify biological terms.

Torii M, Kamboj S, Vijay-Shanker K. Torii M, et al. J Biomed Inform. 2004 Dec;37(6):498-511. doi: 10.1016/j.jbi.2004.08.007. J Biomed Inform. 2004. PMID: 15542022 Free article.

3

Literature mining and database annotation of protein phosphorylation using a rule-based system.

Hu ZZ, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH. Hu ZZ, et al. Bioinformatics. 2005 Jun 1;21(11):2759-65. doi: 10.1093/bioinformatics/bti390. Epub 2005 Apr 6. Bioinformatics. 2005. PMID: 15814565

4

An online literature mining tool for protein phosphorylation.

Yuan X, Hu ZZ, Wu HT, Torii M, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH. Yuan X, et al. Bioinformatics. 2006 Jul 1;22(13):1668-9. doi: 10.1093/bioinformatics/btl159. Epub 2006 Apr 27. Bioinformatics. 2006. PMID: 16644790

5

eGIFT: mining gene information from the literature.

Tudor CO, Schmidt CJ, Vijay-Shanker K. Tudor CO, et al. BMC Bioinformatics. 2010 Aug 9;11:418. doi: 10.1186/1471-2105-11-418. BMC Bioinformatics. 2010. PMID: 20696046 Free PMC article.

6

The eFIP system for text mining of protein interaction networks of phosphorylated proteins.

Tudor CO, Arighi CN, Wang Q, Wu CH, Vijay-Shanker K. Tudor CO, et al. Database (Oxford). 2012 Dec 5;2012:bas044. doi: 10.1093/database/bas044. Print 2012. Database (Oxford). 2012. PMID: 23221174 Free PMC article.

7

A framework for biomedical figure segmentation towards image-based document retrieval.

Lopez LD, Yu J, Arighi C, Tudor CO, Torii M, Huang H, Vijay-Shanker K, Wu C. Lopez LD, et al. BMC Syst Biol. 2013;7 Suppl 4(Suppl 4):S8. doi: 10.1186/1752-0509-7-S4-S8. Epub 2013 Oct 23. BMC Syst Biol. 2013. PMID: 24565394 Free PMC article.

8

iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system.

Peng Y, Tudor CO, Torii M, Wu CH, Vijay-Shanker K. Peng Y, et al. Database (Oxford). 2014 May 21;2014:bau038. doi: 10.1093/database/bau038. Print 2014. Database (Oxford). 2014. PMID: 24850848 Free PMC article.

9

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.

Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, Arighi CN, Huang H, Vijay-Shanker K, Wu CH. Torii M, et al. Database (Oxford). 2014 Aug 13;2014:bau081. doi: 10.1093/database/bau081. Print 2014. Database (Oxford). 2014. PMID: 25122463 Free PMC article.

10

Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.

Tudor CO, Ross KE, Li G, Vijay-Shanker K, Wu CH, Arighi CN. Tudor CO, et al. Database (Oxford). 2015 Mar 31;2015:bav020. doi: 10.1093/database/bav020. Print 2015. Database (Oxford). 2015. PMID: 25833953 Free PMC article.

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