Sepehri A - Search Results

1

Improving the efficiency of configurational-bias Monte Carlo: a density-guided method for generating bending angle trials for linear and branched molecules.

Sepehri A, Loeffler TD, Chen B. Sepehri A, et al. J Chem Phys. 2014 Aug 21;141(7):074102. doi: 10.1063/1.4892640. J Chem Phys. 2014. PMID: 25149770

2

Improved Monte Carlo Scheme for Efficient Particle Transfer in Heterogeneous Systems in the Grand Canonical Ensemble: Application to Vapor-Liquid Nucleation.

Loeffler TD, Sepehri A, Chen B. Loeffler TD, et al. Among authors: sepehri a. J Chem Theory Comput. 2015 Sep 8;11(9):4023-32. doi: 10.1021/acs.jctc.5b00466. Epub 2015 Aug 11. J Chem Theory Comput. 2015. PMID: 26575898

3

Improving the Efficiency of Configurational-Bias Monte Carlo: A Jacobian-Gaussian Scheme for Generating Bending Angle Trials for Linear and Branched Molecules.

Sepehri A, Loeffler TD, Chen B. Sepehri A, et al. J Chem Theory Comput. 2017 Apr 11;13(4):1577-1583. doi: 10.1021/acs.jctc.7b00173. Epub 2017 Mar 23. J Chem Theory Comput. 2017. PMID: 28296397

4

Improving the Efficiency of Configurational-Bias Monte Carlo: Extension of the Jacobian-Gaussian Scheme to Interior Sections of Cyclic and Polymeric Molecules.

Sepehri A, Loeffler TD, Chen B. Sepehri A, et al. J Chem Theory Comput. 2017 Sep 12;13(9):4043-4053. doi: 10.1021/acs.jctc.7b00478. Epub 2017 Aug 2. J Chem Theory Comput. 2017. PMID: 28715186

5

Vapor phase nucleation of the short-chain n-alkanes (n-pentane, n-hexane and n-heptane): Experiments and Monte Carlo simulations.

Ogunronbi KE, Sepehri A, Chen B, Wyslouzil BE. Ogunronbi KE, et al. Among authors: sepehri a. J Chem Phys. 2018 Apr 14;148(14):144312. doi: 10.1063/1.5023567. J Chem Phys. 2018. PMID: 29655353

6

Rice H2A.Z negatively regulates genes responsive to nutrient starvation but promotes expression of key housekeeping genes.

Zahraeifard S, Foroozani M, Sepehri A, Oh DH, Wang G, Mangu V, Chen B, Baisakh N, Dassanayake M, Smith AP. Zahraeifard S, et al. Among authors: sepehri a. J Exp Bot. 2018 Sep 14;69(20):4907-4919. doi: 10.1093/jxb/ery244. J Exp Bot. 2018. PMID: 29955860 Free PMC article.

7

Amino acid deprotonation rates from classical force fields.

Lazaridis T, Sepehri A. Lazaridis T, et al. Among authors: sepehri a. J Chem Phys. 2022 Aug 28;157(8):085101. doi: 10.1063/5.0101960. J Chem Phys. 2022. PMID: 36050014

8

Mechanisms of negative membrane curvature sensing and generation by ESCRT III subunit Snf7.

Nepal B, Sepehri A, Lazaridis T. Nepal B, et al. Among authors: sepehri a. Protein Sci. 2020 Jun;29(6):1473-1485. doi: 10.1002/pro.3851. Epub 2020 Mar 18. Protein Sci. 2020. PMID: 32142182 Free PMC article.

9

What Makes a Good Pore Former: A Study of Synthetic Melittin Derivatives.

Sepehri A, PeBenito L, Pino-Angeles A, Lazaridis T. Sepehri A, et al. Biophys J. 2020 Apr 21;118(8):1901-1913. doi: 10.1016/j.bpj.2020.02.024. Epub 2020 Mar 3. Biophys J. 2020. PMID: 32183940 Free PMC article.

10

Lipid interactions of an actinoporin pore-forming oligomer.

Sepehri A, Nepal B, Lazaridis T. Sepehri A, et al. Biophys J. 2021 Apr 20;120(8):1357-1366. doi: 10.1016/j.bpj.2021.02.015. Epub 2021 Feb 20. Biophys J. 2021. PMID: 33617834 Free PMC article.

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