Ogura T - Search Results

1

New simulated annealing approach considering helix bending applied to determine the 8.8Å structure of 15-protofilament microtubules.

Ogura T, Yajima H, Nitta R, Hirokawa N, Sato C. Ogura T, et al. J Struct Biol. 2014 Nov;188(2):165-76. doi: 10.1016/j.jsb.2014.08.009. Epub 2014 Sep 1. J Struct Biol. 2014. PMID: 25193738

2

An automatic particle pickup method using a neural network applicable to low-contrast electron micrographs.

Ogura T, Sato C. Ogura T, et al. J Struct Biol. 2001 Dec;136(3):227-38. doi: 10.1006/jsbi.2002.4442. J Struct Biol. 2001. PMID: 12051902

3

Topology representing network enables highly accurate classification of protein images taken by cryo electron-microscope without masking.

Ogura T, Iwasaki K, Sato C. Ogura T, et al. J Struct Biol. 2003 Sep;143(3):185-200. doi: 10.1016/j.jsb.2003.08.005. J Struct Biol. 2003. PMID: 14572474

4

Inositol 1,4,5-trisphosphate receptor contains multiple cavities and L-shaped ligand-binding domains.

Sato C, Hamada K, Ogura T, Miyazawa A, Iwasaki K, Hiroaki Y, Tani K, Terauchi A, Fujiyoshi Y, Mikoshiba K. Sato C, et al. Among authors: ogura t. J Mol Biol. 2004 Feb 6;336(1):155-64. doi: 10.1016/j.jmb.2003.11.024. J Mol Biol. 2004. PMID: 14741211

5

Automatic particle pickup method using a neural network has high accuracy by applying an initial weight derived from eigenimages: a new reference free method for single-particle analysis.

Ogura T, Sato C. Ogura T, et al. J Struct Biol. 2004 Jan-Feb;145(1-2):63-75. doi: 10.1016/s1047-8477(03)00139-4. J Struct Biol. 2004. PMID: 15065674

6

Auto-accumulation method using simulated annealing enables fully automatic particle pickup completely free from a matching template or learning data.

Ogura T, Sato C. Ogura T, et al. J Struct Biol. 2004 Jun;146(3):344-58. doi: 10.1016/j.jsb.2004.01.007. J Struct Biol. 2004. PMID: 15099576

7

The non-selective cation-permeable channel TRPC3 is a tetrahedron with a cap on the large cytoplasmic end.

Mio K, Ogura T, Hara Y, Mori Y, Sato C. Mio K, et al. Among authors: ogura t. Biochem Biophys Res Commun. 2005 Aug 5;333(3):768-77. doi: 10.1016/j.bbrc.2005.05.181. Biochem Biophys Res Commun. 2005. PMID: 15964551

8

[Single particle analysis of sodium channel: 3D reconstruction from electron microscope images].

Ogura T, Mio K, Sato C. Ogura T, et al. Tanpakushitsu Kakusan Koso. 2005 Aug;50(10 Suppl):1284-91. Tanpakushitsu Kakusan Koso. 2005. PMID: 16104596 Review. Japanese. No abstract available.

9

Visualization of the trimeric P2X2 receptor with a crown-capped extracellular domain.

Mio K, Kubo Y, Ogura T, Yamamoto T, Sato C. Mio K, et al. Among authors: ogura t. Biochem Biophys Res Commun. 2005 Nov 25;337(3):998-1005. doi: 10.1016/j.bbrc.2005.09.141. Epub 2005 Oct 3. Biochem Biophys Res Commun. 2005. PMID: 16219297

10

Three-dimensional structure of the gamma-secretase complex.

Ogura T, Mio K, Hayashi I, Miyashita H, Fukuda R, Kopan R, Kodama T, Hamakubo T, Iwatsubo T, Tomita T, Sato C. Ogura T, et al. Biochem Biophys Res Commun. 2006 May 5;343(2):525-34. doi: 10.1016/j.bbrc.2006.02.158. Epub 2006 Mar 9. Biochem Biophys Res Commun. 2006. PMID: 16546128

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