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Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles.
Nandi T, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, Wang S, How LC, Sim B, Essex-Lopresti A, Sarkar-Tyson M, Nelson M, Smither S, Ong C, Aw LT, Hoon CH, Michell S, Studholme DJ, Titball R, Chen SL, Parkhill J, Tan P. Nandi T, et al. Genome Res. 2015 Jan;25(1):129-41. doi: 10.1101/gr.177543.114. Epub 2014 Sep 18. Genome Res. 2015. PMID: 25236617 Free PMC article.
A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence.
Nandi T, Ong C, Singh AP, Boddey J, Atkins T, Sarkar-Tyson M, Essex-Lopresti AE, Chua HH, Pearson T, Kreisberg JF, Nilsson C, Ariyaratne P, Ronning C, Losada L, Ruan Y, Sung WK, Woods D, Titball RW, Beacham I, Peak I, Keim P, Nierman WC, Tan P. Nandi T, et al. PLoS Pathog. 2010 Apr 1;6(4):e1000845. doi: 10.1371/journal.ppat.1000845. PLoS Pathog. 2010. PMID: 20368977 Free PMC article.
Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates.
Sim BM, Chantratita N, Ooi WF, Nandi T, Tewhey R, Wuthiekanun V, Thaipadungpanit J, Tumapa S, Ariyaratne P, Sung WK, Sem XH, Chua HH, Ramnarayanan K, Lin CH, Liu Y, Feil EJ, Glass MB, Tan G, Peacock SJ, Tan P. Sim BM, et al. Among authors: nandi t. Genome Biol. 2010;11(8):R89. doi: 10.1186/gb-2010-11-8-r89. Epub 2010 Aug 27. Genome Biol. 2010. PMID: 20799932 Free PMC article.
The condition-dependent transcriptional landscape of Burkholderia pseudomallei.
Ooi WF, Ong C, Nandi T, Kreisberg JF, Chua HH, Sun G, Chen Y, Mueller C, Conejero L, Eshaghi M, Ang RM, Liu J, Sobral BW, Korbsrisate S, Gan YH, Titball RW, Bancroft GJ, Valade E, Tan P. Ooi WF, et al. Among authors: nandi t. PLoS Genet. 2013;9(9):e1003795. doi: 10.1371/journal.pgen.1003795. Epub 2013 Sep 12. PLoS Genet. 2013. PMID: 24068961 Free PMC article.
Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles.
Nandi T, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, Wang S, How LC, Sim B, Essex-Lopresti A, Sarkar-Tyson M, Nelson M, Smither S, Ong C, Aw LT, Hoon CH, Michell S, Studholme DJ, Titball R, Chen SL, Parkhill J, Tan P. Nandi T, et al. Genome Res. 2015 Apr;25(4):608. Genome Res. 2015. PMID: 25834186 Free PMC article. No abstract available.
Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements.
Losada L, Ronning CM, DeShazer D, Woods D, Fedorova N, Kim HS, Shabalina SA, Pearson TR, Brinkac L, Tan P, Nandi T, Crabtree J, Badger J, Beckstrom-Sternberg S, Saqib M, Schutzer SE, Keim P, Nierman WC. Losada L, et al. Among authors: nandi t. Genome Biol Evol. 2010 Jan 22;2:102-16. doi: 10.1093/gbe/evq003. Genome Biol Evol. 2010. PMID: 20333227 Free PMC article.
141 results