Xuan J - Search Results

1

KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.

Tian Y, Zhang B, Hoffman EP, Clarke R, Zhang Z, Shih IeM, Xuan J, Herrington DM, Wang Y. Tian Y, et al. Among authors: xuan j. Bioinformatics. 2015 Jan 15;31(2):287-9. doi: 10.1093/bioinformatics/btu632. Epub 2014 Sep 30. Bioinformatics. 2015. PMID: 25273109 Free PMC article.

2

Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.

Wang Z, Wang Y, Xuan J, Dong Y, Bakay M, Feng Y, Clarke R, Hoffman EP. Wang Z, et al. Among authors: xuan j. Bioinformatics. 2006 Mar 15;22(6):755-61. doi: 10.1093/bioinformatics/btk036. Epub 2006 Jan 10. Bioinformatics. 2006. PMID: 16403791

3

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R. Chen L, et al. Among authors: xuan j. BMC Bioinformatics. 2008 Oct 6;9:416. doi: 10.1186/1471-2105-9-416. BMC Bioinformatics. 2008. PMID: 18837990 Free PMC article.

4

Differential dependency network analysis to identify condition-specific topological changes in biological networks.

Zhang B, Li H, Riggins RB, Zhan M, Xuan J, Zhang Z, Hoffman EP, Clarke R, Wang Y. Zhang B, et al. Among authors: xuan j. Bioinformatics. 2009 Feb 15;25(4):526-32. doi: 10.1093/bioinformatics/btn660. Epub 2008 Dec 26. Bioinformatics. 2009. PMID: 19112081 Free PMC article.

5

Multilevel support vector regression analysis to identify condition-specific regulatory networks.

Chen L, Xuan J, Riggins RB, Wang Y, Hoffman EP, Clarke R. Chen L, et al. Among authors: xuan j. Bioinformatics. 2010 Jun 1;26(11):1416-22. doi: 10.1093/bioinformatics/btq144. Epub 2010 Apr 7. Bioinformatics. 2010. PMID: 20375112 Free PMC article.

6

PUGSVM: a caBIG™ analytical tool for multiclass gene selection and predictive classification.

Yu G, Li H, Ha S, Shih IeM, Clarke R, Hoffman EP, Madhavan S, Xuan J, Wang Y. Yu G, et al. Among authors: xuan j. Bioinformatics. 2011 Mar 1;27(5):736-8. doi: 10.1093/bioinformatics/btq721. Epub 2010 Dec 24. Bioinformatics. 2011. PMID: 21186245 Free PMC article.

7

DDN: a caBIG® analytical tool for differential network analysis.

Zhang B, Tian Y, Jin L, Li H, Shih IeM, Madhavan S, Clarke R, Hoffman EP, Xuan J, Hilakivi-Clarke L, Wang Y. Zhang B, et al. Among authors: xuan j. Bioinformatics. 2011 Apr 1;27(7):1036-8. doi: 10.1093/bioinformatics/btr052. Epub 2011 Feb 3. Bioinformatics. 2011. PMID: 21296752 Free PMC article.

8

Motif-guided sparse decomposition of gene expression data for regulatory module identification.

Gong T, Xuan J, Chen L, Riggins RB, Li H, Hoffman EP, Clarke R, Wang Y. Gong T, et al. Among authors: xuan j. BMC Bioinformatics. 2011 Mar 22;12:82. doi: 10.1186/1471-2105-12-82. BMC Bioinformatics. 2011. PMID: 21426557 Free PMC article.

9

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.

Gu J, Xuan J, Riggins RB, Chen L, Wang Y, Clarke R. Gu J, et al. Among authors: xuan j. Bioinformatics. 2012 Aug 1;28(15):1990-7. doi: 10.1093/bioinformatics/bts296. Epub 2012 May 17. Bioinformatics. 2012. PMID: 22595208 Free PMC article.

10

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.

Tian Y, Zhang B, Hoffman EP, Clarke R, Zhang Z, Shih IeM, Xuan J, Herrington DM, Wang Y. Tian Y, et al. Among authors: xuan j. BMC Syst Biol. 2014 Jul 24;8:87. doi: 10.1186/s12918-014-0087-1. BMC Syst Biol. 2014. PMID: 25055984 Free PMC article.

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