Ma S - Search Results

1

Mapping and manipulating the Mycobacterium tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network.

Rustad TR, Minch KJ, Ma S, Winkler JK, Hobbs S, Hickey M, Brabant W, Turkarslan S, Price ND, Baliga NS, Sherman DR. Rustad TR, et al. Among authors: ma s. Genome Biol. 2014;15(11):502. doi: 10.1186/PREACCEPT-1701638048134699. Genome Biol. 2014. PMID: 25380655 Free PMC article.

2

Systems approaches to molecular cancer diagnostics.

Ma S, Funk CC, Price ND. Ma S, et al. Discov Med. 2010 Dec;10(55):531-42. Discov Med. 2010. PMID: 21189224 Free PMC article. Review.

3

Label-free proteomics and systems biology analysis of mycobacterial phagosomes in dendritic cells and macrophages.

Li Q, Singh CR, Ma S, Price ND, Jagannath C. Li Q, et al. Among authors: ma s. J Proteome Res. 2011 May 6;10(5):2425-39. doi: 10.1021/pr101245u. Epub 2011 Mar 30. J Proteome Res. 2011. PMID: 21413810 Free PMC article.

4

Multi-study integration of brain cancer transcriptomes reveals organ-level molecular signatures.

Sung J, Kim PJ, Ma S, Funk CC, Magis AT, Wang Y, Hood L, Geman D, Price ND. Sung J, et al. Among authors: ma s. PLoS Comput Biol. 2013;9(7):e1003148. doi: 10.1371/journal.pcbi.1003148. Epub 2013 Jul 25. PLoS Comput Biol. 2013. PMID: 23935471 Free PMC article.

5

Measuring the effect of inter-study variability on estimating prediction error.

Ma S, Sung J, Magis AT, Wang Y, Geman D, Price ND. Ma S, et al. PLoS One. 2014 Oct 17;9(10):e110840. doi: 10.1371/journal.pone.0110840. eCollection 2014. PLoS One. 2014. PMID: 25330348 Free PMC article.

6

The DNA-binding network of Mycobacterium tuberculosis.

Minch KJ, Rustad TR, Peterson EJ, Winkler J, Reiss DJ, Ma S, Hickey M, Brabant W, Morrison B, Turkarslan S, Mawhinney C, Galagan JE, Price ND, Baliga NS, Sherman DR. Minch KJ, et al. Among authors: ma s. Nat Commun. 2015 Jan 12;6:5829. doi: 10.1038/ncomms6829. Nat Commun. 2015. PMID: 25581030 Free PMC article.

7

A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis.

Turkarslan S, Peterson EJ, Rustad TR, Minch KJ, Reiss DJ, Morrison R, Ma S, Price ND, Sherman DR, Baliga NS. Turkarslan S, et al. Among authors: ma s. Sci Data. 2015 Mar 31;2:150010. doi: 10.1038/sdata.2015.10. eCollection 2015. Sci Data. 2015. PMID: 25977815 Free PMC article.

8

Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis.

Ma S, Minch KJ, Rustad TR, Hobbs S, Zhou SL, Sherman DR, Price ND. Ma S, et al. PLoS Comput Biol. 2015 Nov 30;11(11):e1004543. doi: 10.1371/journal.pcbi.1004543. eCollection 2015 Nov. PLoS Comput Biol. 2015. PMID: 26618656 Free PMC article.

9

Network analysis identifies Rv0324 and Rv0880 as regulators of bedaquiline tolerance in Mycobacterium tuberculosis.

Peterson EJR, Ma S, Sherman DR, Baliga NS. Peterson EJR, et al. Among authors: ma s. Nat Microbiol. 2016 Jun 6;1(8):16078. doi: 10.1038/nmicrobiol.2016.78. Nat Microbiol. 2016. PMID: 27573104 Free PMC article.

10

Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast.

Wang Z, Danziger SA, Heavner BD, Ma S, Smith JJ, Li S, Herricks T, Simeonidis E, Baliga NS, Aitchison JD, Price ND. Wang Z, et al. Among authors: ma s. PLoS Comput Biol. 2017 May 17;13(5):e1005489. doi: 10.1371/journal.pcbi.1005489. eCollection 2017 May. PLoS Comput Biol. 2017. PMID: 28520713 Free PMC article.

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