Otero-Muras I - Search Results

1

A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curves.

Otero-Muras I, Yordanov P, Stelling J. Otero-Muras I, et al. BMC Syst Biol. 2014 Nov 20;8:114. doi: 10.1186/s12918-014-0114-2. BMC Syst Biol. 2014. PMID: 25409687 Free PMC article.

2

Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems.

Sequeiros C, Otero-Muras I, Vazquez C, Banga JR. Sequeiros C, et al. Among authors: otero muras i. IEEE/ACM Trans Comput Biol Bioinform. 2023 May-Jun;20(3):1971-1982. doi: 10.1109/TCBB.2022.3225675. Epub 2023 Jun 5. IEEE/ACM Trans Comput Biol Bioinform. 2023. PMID: 36449576

3

Characterizing multistationarity regimes in biochemical reaction networks.

Otero-Muras I, Banga JR, Alonso AA. Otero-Muras I, et al. PLoS One. 2012;7(7):e39194. doi: 10.1371/journal.pone.0039194. Epub 2012 Jul 3. PLoS One. 2012. PMID: 22802936 Free PMC article.

4

Stochastic modeling and numerical simulation of gene regulatory networks with protein bursting.

Pájaro M, Alonso AA, Otero-Muras I, Vázquez C. Pájaro M, et al. J Theor Biol. 2017 May 21;421:51-70. doi: 10.1016/j.jtbi.2017.03.017. Epub 2017 Mar 21. J Theor Biol. 2017. PMID: 28341132

5

Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling.

Otero-Muras I, Yordanov P, Stelling J. Otero-Muras I, et al. PLoS Comput Biol. 2017 Apr 3;13(4):e1005454. doi: 10.1371/journal.pcbi.1005454. eCollection 2017 Apr. PLoS Comput Biol. 2017. PMID: 28369103 Free PMC article.

6

SELANSI: a toolbox for simulation of stochastic gene regulatory networks.

Pájaro M, Otero-Muras I, Vázquez C, Alonso AA. Pájaro M, et al. Bioinformatics. 2018 Mar 1;34(5):893-895. doi: 10.1093/bioinformatics/btx645. Bioinformatics. 2018. PMID: 29040384 Free PMC article.

7

Transient hysteresis and inherent stochasticity in gene regulatory networks.

Pájaro M, Otero-Muras I, Vázquez C, Alonso AA. Pájaro M, et al. Nat Commun. 2019 Oct 8;10(1):4581. doi: 10.1038/s41467-019-12344-w. Nat Commun. 2019. PMID: 31594925 Free PMC article.

8

BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networks.

Yordanov P, Stelling J, Otero-Muras I. Yordanov P, et al. Bioinformatics. 2020 Mar 1;36(5):1640-1641. doi: 10.1093/bioinformatics/btz746. Bioinformatics. 2020. PMID: 31609384

9

CRNT4SBML: a Python package for the detection of bistability in biochemical reaction networks.

Reyes BC, Otero-Muras I, Shuen MT, Tartakovsky AM, Petyuk VA. Reyes BC, et al. Bioinformatics. 2020 Jun 1;36(12):3922-3924. doi: 10.1093/bioinformatics/btaa241. Bioinformatics. 2020. PMID: 32289149

10

Synthetic Gene Circuit Analysis and Optimization.

Otero-Muras I, Banga JR. Otero-Muras I, et al. Methods Mol Biol. 2021;2189:89-103. doi: 10.1007/978-1-0716-0822-7_8. Methods Mol Biol. 2021. PMID: 33180296

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