Chatterjee P - Search Results

1

FunPred-1: protein function prediction from a protein interaction network using neighborhood analysis.

Saha S, Chatterjee P, Basu S, Kundu M, Nasipuri M. Saha S, et al. Among authors: chatterjee p. Cell Mol Biol Lett. 2014 Dec;19(4):675-91. doi: 10.2478/s11658-014-0221-5. Epub 2014 Nov 25. Cell Mol Biol Lett. 2014. PMID: 25424913 Free PMC article.

2

PPI_SVM: prediction of protein-protein interactions using machine learning, domain-domain affinities and frequency tables.

Chatterjee P, Basu S, Kundu M, Nasipuri M, Plewczynski D. Chatterjee P, et al. Cell Mol Biol Lett. 2011 Jun;16(2):264-78. doi: 10.2478/s11658-011-0008-x. Epub 2011 Mar 20. Cell Mol Biol Lett. 2011. PMID: 21442443 Free PMC article.

3

PSP_MCSVM: brainstorming consensus prediction of protein secondary structures using two-stage multiclass support vector machines.

Chatterjee P, Basu S, Kundu M, Nasipuri M, Plewczynski D. Chatterjee P, et al. J Mol Model. 2011 Sep;17(9):2191-201. doi: 10.1007/s00894-011-1102-8. Epub 2011 May 19. J Mol Model. 2011. PMID: 21594694 Free PMC article.

4

PDP-CON: prediction of domain/linker residues in protein sequences using a consensus approach.

Chatterjee P, Basu S, Zubek J, Kundu M, Nasipuri M, Plewczynski D. Chatterjee P, et al. J Mol Model. 2016 Apr;22(4):72. doi: 10.1007/s00894-016-2933-0. Epub 2016 Mar 11. J Mol Model. 2016. PMID: 26969678 Free PMC article.

5

Analysis of protein targets in pathogen-host interaction in infectious diseases: a case study on Plasmodium falciparum and Homo sapiens interaction network.

Saha S, Sengupta K, Chatterjee P, Basu S, Nasipuri M. Saha S, et al. Among authors: chatterjee p. Brief Funct Genomics. 2018 Nov 26;17(6):441-450. doi: 10.1093/bfgp/elx024. Brief Funct Genomics. 2018. PMID: 29028886 Review.

6

3gClust: Human Protein Cluster Analysis.

Halder AK, Chatterjee P, Nasipuri M, Plewczynski D, Basu S. Halder AK, et al. Among authors: chatterjee p. IEEE/ACM Trans Comput Biol Bioinform. 2019 Nov-Dec;16(6):1773-1784. doi: 10.1109/TCBB.2018.2840996. Epub 2018 May 30. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 29993556

7

Protein function prediction from protein-protein interaction network using gene ontology based neighborhood analysis and physico-chemical features.

Saha S, Prasad A, Chatterjee P, Basu S, Nasipuri M. Saha S, et al. Among authors: chatterjee p. J Bioinform Comput Biol. 2018 Dec;16(6):1850025. doi: 10.1142/S0219720018500257. Epub 2018 Sep 19. J Bioinform Comput Biol. 2018. PMID: 30400756

8

FunPred 3.0: improved protein function prediction using protein interaction network.

Saha S, Chatterjee P, Basu S, Nasipuri M, Plewczynski D. Saha S, et al. Among authors: chatterjee p. PeerJ. 2019 May 22;7:e6830. doi: 10.7717/peerj.6830. eCollection 2019. PeerJ. 2019. PMID: 31198622 Free PMC article.

9

Protein function prediction from dynamic protein interaction network using gene expression data.

Saha S, Prasad A, Chatterjee P, Basu S, Nasipuri M. Saha S, et al. Among authors: chatterjee p. J Bioinform Comput Biol. 2019 Aug;17(4):1950025. doi: 10.1142/S0219720019500252. J Bioinform Comput Biol. 2019. PMID: 31617461

10

JUPPI: A Multi-Level Feature Based Method for PPI Prediction and a Refined Strategy for Performance Assessment.

Halder AK, Bandyopadhyay SS, Chatterjee P, Nasipuri M, Plewczynski D, Basu S. Halder AK, et al. Among authors: chatterjee p. IEEE/ACM Trans Comput Biol Bioinform. 2022 Jan-Feb;19(1):531-542. doi: 10.1109/TCBB.2020.3004970. Epub 2022 Feb 3. IEEE/ACM Trans Comput Biol Bioinform. 2022. PMID: 32750875

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