Banáš P - Search Results

1

Molecular dynamic simulations of protein/RNA complexes: CRISPR/Csy4 endoribonuclease.

Estarellas C, Otyepka M, Koča J, Banáš P, Krepl M, Šponer J. Estarellas C, et al. Among authors: banas p. Biochim Biophys Acta. 2015 May;1850(5):1072-1090. doi: 10.1016/j.bbagen.2014.10.021. Epub 2014 Oct 24. Biochim Biophys Acta. 2015. PMID: 25450173

2

CAVER: a new tool to explore routes from protein clefts, pockets and cavities.

Petrek M, Otyepka M, Banás P, Kosinová P, Koca J, Damborský J. Petrek M, et al. Among authors: banas p. BMC Bioinformatics. 2006 Jun 22;7:316. doi: 10.1186/1471-2105-7-316. BMC Bioinformatics. 2006. PMID: 16792811 Free PMC article.

3

Mechanism of enhanced conversion of 1,2,3-trichloropropane by mutant haloalkane dehalogenase revealed by molecular modeling.

Banás P, Otyepka M, Jerábek P, Petrek M, Damborský J. Banás P, et al. J Comput Aided Mol Des. 2006 Jun;20(6):375-83. doi: 10.1007/s10822-006-9071-1. Epub 2006 Oct 3. J Comput Aided Mol Des. 2006. PMID: 17016745

4

Identification of tunnels in proteins, nucleic acids, inorganic materials and molecular ensembles.

Damborský J, Petrek M, Banás P, Otyepka M. Damborský J, et al. Among authors: banas p. Biotechnol J. 2007 Jan;2(1):62-7. doi: 10.1002/biot.200600208. Biotechnol J. 2007. PMID: 17183511

5

Second step of hydrolytic dehalogenation in haloalkane dehalogenase investigated by QM/MM methods.

Otyepka M, Banás P, Magistrato A, Carloni P, Damborský J. Otyepka M, et al. Among authors: banas p. Proteins. 2008 Feb 15;70(3):707-17. doi: 10.1002/prot.21523. Proteins. 2008. PMID: 17729274

6

Two C-terminal ankyrin repeats form the minimal stable unit of the ankyrin repeat protein p18INK4c.

Sklenovský P, Banás P, Otyepka M. Sklenovský P, et al. Among authors: banas p. J Mol Model. 2008 Aug;14(8):747-59. doi: 10.1007/s00894-008-0300-5. Epub 2008 May 15. J Mol Model. 2008. PMID: 18481120

7

General base catalysis for cleavage by the active-site cytosine of the hepatitis delta virus ribozyme: QM/MM calculations establish chemical feasibility.

Banás P, Rulísek L, Hánosová V, Svozil D, Walter NG, Sponer J, Otyepka M. Banás P, et al. J Phys Chem B. 2008 Sep 4;112(35):11177-87. doi: 10.1021/jp802592z. Epub 2008 Aug 8. J Phys Chem B. 2008. PMID: 18686993 Free PMC article.

8

Theoretical studies of RNA catalysis: hybrid QM/MM methods and their comparison with MD and QM.

Banás P, Jurecka P, Walter NG, Sponer J, Otyepka M. Banás P, et al. Methods. 2009 Oct;49(2):202-16. doi: 10.1016/j.ymeth.2009.04.007. Epub 2009 May 4. Methods. 2009. PMID: 19398008 Free PMC article. Review.

9

Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate.

Pavlova M, Klvana M, Prokop Z, Chaloupkova R, Banas P, Otyepka M, Wade RC, Tsuda M, Nagata Y, Damborsky J. Pavlova M, et al. Among authors: banas p. Nat Chem Biol. 2009 Oct;5(10):727-33. doi: 10.1038/nchembio.205. Epub 2009 Aug 23. Nat Chem Biol. 2009. PMID: 19701186

10

Theoretical studies on the intermolecular interactions of potentially primordial base-pair analogues.

Sponer JE, Vázquez-Mayagoitia A, Sumpter BG, Leszczynski J, Sponer J, Otyepka M, Banás P, Fuentes-Cabrera M. Sponer JE, et al. Among authors: banas p. Chemistry. 2010 Mar 8;16(10):3057-65. doi: 10.1002/chem.200902068. Chemistry. 2010. PMID: 20119984

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

80 results

Search Page

Filters