Zandarashvili L - Search Results

1

Temperature dependence of internal motions of protein side-chain NH3(+) groups: insight into energy barriers for transient breakage of hydrogen bonds.

Zandarashvili L, Iwahara J. Zandarashvili L, et al. Biochemistry. 2015 Jan 20;54(2):538-45. doi: 10.1021/bi5012749. Epub 2014 Dec 22. Biochemistry. 2015. PMID: 25489884

2

Signature of mobile hydrogen bonding of lysine side chains from long-range 15N-13C scalar J-couplings and computation.

Zandarashvili L, Li DW, Wang T, Brüschweiler R, Iwahara J. Zandarashvili L, et al. J Am Chem Soc. 2011 Jun 22;133(24):9192-5. doi: 10.1021/ja202219n. Epub 2011 May 27. J Am Chem Soc. 2011. PMID: 21591797

3

NMR studies on the dynamics of hydrogen bonds and ion pairs involving lysine side chains of proteins.

Zandarashvili L, Esadze A, Iwahara J. Zandarashvili L, et al. Adv Protein Chem Struct Biol. 2013;93:37-80. doi: 10.1016/B978-0-12-416596-0.00002-6. Adv Protein Chem Struct Biol. 2013. PMID: 24018322 Review.

4

Effective strategy to assign ¹H- ¹⁵N heteronuclear correlation NMR signals from lysine side-chain NH3₃⁺ groups of proteins at low temperature.

Esadze A, Zandarashvili L, Iwahara J. Esadze A, et al. Among authors: zandarashvili l. J Biomol NMR. 2014 Sep;60(1):23-7. doi: 10.1007/s10858-014-9854-y. Epub 2014 Aug 17. J Biomol NMR. 2014. PMID: 25129623 Free PMC article.

5

Residence Times of Molecular Complexes in Solution from NMR Data of Intermolecular Hydrogen-Bond Scalar Coupling.

Zandarashvili L, Esadze A, Kemme CA, Chattopadhyay A, Nguyen D, Iwahara J. Zandarashvili L, et al. J Phys Chem Lett. 2016 Mar 3;7(5):820-4. doi: 10.1021/acs.jpclett.6b00019. Epub 2016 Feb 22. J Phys Chem Lett. 2016. PMID: 26881297 Free PMC article.

6

Changes in conformational dynamics of basic side chains upon protein-DNA association.

Esadze A, Chen C, Zandarashvili L, Roy S, Pettitt BM, Iwahara J. Esadze A, et al. Among authors: zandarashvili l. Nucleic Acids Res. 2016 Aug 19;44(14):6961-70. doi: 10.1093/nar/gkw531. Epub 2016 Jun 10. Nucleic Acids Res. 2016. PMID: 27288446 Free PMC article.

7

Thermodynamic Additivity for Impacts of Base-Pair Substitutions on Association of the Egr-1 Zinc-Finger Protein with DNA.

Chattopadhyay A, Zandarashvili L, Luu RH, Iwahara J. Chattopadhyay A, et al. Among authors: zandarashvili l. Biochemistry. 2016 Nov 29;55(47):6467-6474. doi: 10.1021/acs.biochem.6b00757. Epub 2016 Nov 11. Biochemistry. 2016. PMID: 27933778 Free PMC article.

8

Stereospecific Effects of Oxygen-to-Sulfur Substitution in DNA Phosphate on Ion Pair Dynamics and Protein-DNA Affinity.

Nguyen D, Zandarashvili L, White MA, Iwahara J. Nguyen D, et al. Among authors: zandarashvili l. Chembiochem. 2016 Sep 2;17(17):1636-42. doi: 10.1002/cbic.201600265. Epub 2016 Jul 13. Chembiochem. 2016. PMID: 27271797 Free PMC article.

9

Asymmetrical roles of zinc fingers in dynamic DNA-scanning process by the inducible transcription factor Egr-1.

Zandarashvili L, Vuzman D, Esadze A, Takayama Y, Sahu D, Levy Y, Iwahara J. Zandarashvili L, et al. Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):E1724-32. doi: 10.1073/pnas.1121500109. Epub 2012 Jun 6. Proc Natl Acad Sci U S A. 2012. PMID: 22675124 Free PMC article.

10

Real-time kinetics of high-mobility group box 1 (HMGB1) oxidation in extracellular fluids studied by in situ protein NMR spectroscopy.

Zandarashvili L, Sahu D, Lee K, Lee YS, Singh P, Rajarathnam K, Iwahara J. Zandarashvili L, et al. J Biol Chem. 2013 Apr 26;288(17):11621-7. doi: 10.1074/jbc.M113.449942. Epub 2013 Feb 27. J Biol Chem. 2013. PMID: 23447529 Free PMC article. Clinical Trial.

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