Clementi C - Search Results

1

Jagged-Delta asymmetry in Notch signaling can give rise to a Sender/Receiver hybrid phenotype.

Boareto M, Jolly MK, Lu M, Onuchic JN, Clementi C, Ben-Jacob E. Boareto M, et al. Among authors: clementi c. Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):E402-9. doi: 10.1073/pnas.1416287112. Epub 2015 Jan 20. Proc Natl Acad Sci U S A. 2015. PMID: 25605936 Free PMC article.

2

Two for One: Diffusion Models and Force Fields for Coarse-Grained Molecular Dynamics.

Arts M, Garcia Satorras V, Huang CW, Zügner D, Federici M, Clementi C, Noé F, Pinsler R, van den Berg R. Arts M, et al. Among authors: clementi c. J Chem Theory Comput. 2023 Sep 26;19(18):6151-6159. doi: 10.1021/acs.jctc.3c00702. Epub 2023 Sep 9. J Chem Theory Comput. 2023. PMID: 37688551

3

Skipping the Replica Exchange Ladder with Normalizing Flows.

Invernizzi M, Krämer A, Clementi C, Noé F. Invernizzi M, et al. Among authors: clementi c. J Phys Chem Lett. 2022 Dec 22;13(50):11643-11649. doi: 10.1021/acs.jpclett.2c03327. Epub 2022 Dec 9. J Phys Chem Lett. 2022. PMID: 36484770

4

Quantum dynamics using path integral coarse-graining.

Musil F, Zaporozhets I, Noé F, Clementi C, Kapil V. Musil F, et al. Among authors: clementi c. J Chem Phys. 2022 Nov 14;157(18):181102. doi: 10.1063/5.0120386. J Chem Phys. 2022. PMID: 36379765

5

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins.

Clementi C, Nymeyer H, Onuchic JN. Clementi C, et al. J Mol Biol. 2000 May 19;298(5):937-53. doi: 10.1006/jmbi.2000.3693. J Mol Biol. 2000. PMID: 10801360

6

How native-state topology affects the folding of dihydrofolate reductase and interleukin-1beta.

Clementi C, Jennings PA, Onuchic JN. Clementi C, et al. Proc Natl Acad Sci U S A. 2000 May 23;97(11):5871-6. doi: 10.1073/pnas.100547897. Proc Natl Acad Sci U S A. 2000. PMID: 10811910 Free PMC article.

7

Prediction of folding mechanism for circular-permuted proteins.

Clementi C, Jennings PA, Onuchic JN. Clementi C, et al. J Mol Biol. 2001 Aug 24;311(4):879-90. doi: 10.1006/jmbi.2001.4871. J Mol Biol. 2001. PMID: 11518537

8

Interplay among tertiary contacts, secondary structure formation and side-chain packing in the protein folding mechanism: all-atom representation study of protein L.

Clementi C, García AE, Onuchic JN. Clementi C, et al. J Mol Biol. 2003 Feb 21;326(3):933-54. doi: 10.1016/s0022-2836(02)01379-7. J Mol Biol. 2003. PMID: 12581651

9

Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates.

Chavez LL, Onuchic JN, Clementi C. Chavez LL, et al. Among authors: clementi c. J Am Chem Soc. 2004 Jul 14;126(27):8426-32. doi: 10.1021/ja049510+. J Am Chem Soc. 2004. PMID: 15237999

10

Rapid Assessment of T-Cell Receptor Specificity of the Immune Repertoire.

Lin X, George JT, Schafer NP, Chau KN, Birnbaum ME, Clementi C, Onuchic JN, Levine H. Lin X, et al. Among authors: clementi c. Nat Comput Sci. 2021 May;1(5):362-373. doi: 10.1038/s43588-021-00076-1. Epub 2021 May 24. Nat Comput Sci. 2021. PMID: 36090450 Free PMC article.

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