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Human gut microbiota interactions shape the long-term growth dynamics and evolutionary adaptations of Clostridioides difficile.
Sulaiman JE, Thompson J, Cheung PLK, Qian Y, Mill J, James I, Vivas EI, Simcox J, Venturelli O. Sulaiman JE, et al. bioRxiv [Preprint]. 2024 Jul 17:2024.07.15.603560. doi: 10.1101/2024.07.15.603560. bioRxiv. 2024. Update in: Cell Host Microbe. 2025 Jan 8;33(1):42-58.e10. doi: 10.1016/j.chom.2024.12.001 PMID: 39071283 Free PMC article. Updated. Preprint.
Microbial community-scale metabolic modeling predicts personalized short chain fatty acid production profiles in the human gut.
Quinn-Bohmann N, Wilmanski T, Sarmiento KR, Levy L, Lampe JW, Gurry T, Rappaport N, Ostrem EM, Venturelli OS, Diener C, Gibbons SM. Quinn-Bohmann N, et al. Among authors: venturelli os. bioRxiv [Preprint]. 2023 Nov 28:2023.02.28.530516. doi: 10.1101/2023.02.28.530516. bioRxiv. 2023. Update in: Nat Microbiol. 2024 Jul;9(7):1700-1712. doi: 10.1038/s41564-024-01728-4 PMID: 36909644 Free PMC article. Updated. Preprint.
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes.
Sulaiman JE, Thompson J, Qian Y, Vivas EI, Diener C, Gibbons SM, Safdar N, Venturelli OS. Sulaiman JE, et al. Among authors: venturelli os. bioRxiv [Preprint]. 2024 Apr 17:2024.04.13.589383. doi: 10.1101/2024.04.13.589383. bioRxiv. 2024. Update in: Nat Commun. 2024 Aug 28;15(1):7416. doi: 10.1038/s41467-024-51062-w PMID: 38659900 Free PMC article. Updated. Preprint.
Efficient plasmid transfer via natural competence in a microbial co-culture.
Cheng YY, Zhou Z, Papadopoulos JM, Zuke JD, Falbel TG, Anantharaman K, Burton BM, Venturelli OS. Cheng YY, et al. Among authors: venturelli os. Mol Syst Biol. 2023 Mar 9;19(3):e11406. doi: 10.15252/msb.202211406. Epub 2023 Jan 30. Mol Syst Biol. 2023. PMID: 36714980 Free PMC article.
Massively parallel single-cell sequencing of diverse microbial populations.
Lan F, Saba J, Ross TD, Zhou Z, Krauska K, Anantharaman K, Landick R, Venturelli OS. Lan F, et al. Among authors: venturelli os. Nat Methods. 2024 Feb;21(2):228-235. doi: 10.1038/s41592-023-02157-7. Epub 2024 Jan 17. Nat Methods. 2024. PMID: 38233503 Free PMC article.
44 results