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PGAP-X: extension on pan-genome analysis pipeline.
Zhao Y, Sun C, Zhao D, Zhang Y, You Y, Jia X, Yang J, Wang L, Wang J, Fu H, Kang Y, Chen F, Yu J, Wu J, Xiao J. Zhao Y, et al. Among authors: sun c. BMC Genomics. 2018 Jan 19;19(Suppl 1):36. doi: 10.1186/s12864-017-4337-7. BMC Genomics. 2018. PMID: 29363431 Free PMC article.
PGAweb: A Web Server for Bacterial Pan-Genome Analysis.
Chen X, Zhang Y, Zhang Z, Zhao Y, Sun C, Yang M, Wang J, Liu Q, Zhang B, Chen M, Yu J, Wu J, Jin Z, Xiao J. Chen X, et al. Among authors: sun c. Front Microbiol. 2018 Aug 21;9:1910. doi: 10.3389/fmicb.2018.01910. eCollection 2018. Front Microbiol. 2018. PMID: 30186253 Free PMC article.
Genomic variation in 3,010 diverse accessions of Asian cultivated rice.
Wang W, Mauleon R, Hu Z, Chebotarov D, Tai S, Wu Z, Li M, Zheng T, Fuentes RR, Zhang F, Mansueto L, Copetti D, Sanciangco M, Palis KC, Xu J, Sun C, Fu B, Zhang H, Gao Y, Zhao X, Shen F, Cui X, Yu H, Li Z, Chen M, Detras J, Zhou Y, Zhang X, Zhao Y, Kudrna D, Wang C, Li R, Jia B, Lu J, He X, Dong Z, Xu J, Li Y, Wang M, Shi J, Li J, Zhang D, Lee S, Hu W, Poliakov A, Dubchak I, Ulat VJ, Borja FN, Mendoza JR, Ali J, Li J, Gao Q, Niu Y, Yue Z, Naredo MEB, Talag J, Wang X, Li J, Fang X, Yin Y, Glaszmann JC, Zhang J, Li J, Hamilton RS, Wing RA, Ruan J, Zhang G, Wei C, Alexandrov N, McNally KL, Li Z, Leung H. Wang W, et al. Among authors: sun c. Nature. 2018 May;557(7703):43-49. doi: 10.1038/s41586-018-0063-9. Epub 2018 Apr 25. Nature. 2018. PMID: 29695866 Free PMC article.
RPAN: rice pan-genome browser for ∼3000 rice genomes.
Sun C, Hu Z, Zheng T, Lu K, Zhao Y, Wang W, Shi J, Wang C, Lu J, Zhang D, Li Z, Wei C. Sun C, et al. Nucleic Acids Res. 2017 Jan 25;45(2):597-605. doi: 10.1093/nar/gkw958. Epub 2016 Dec 10. Nucleic Acids Res. 2017. PMID: 27940610 Free PMC article.
HUPAN: a pan-genome analysis pipeline for human genomes.
Duan Z, Qiao Y, Lu J, Lu H, Zhang W, Yan F, Sun C, Hu Z, Zhang Z, Li G, Chen H, Xiang Z, Zhu Z, Zhao H, Yu Y, Wei C. Duan Z, et al. Among authors: sun c. Genome Biol. 2019 Jul 31;20(1):149. doi: 10.1186/s13059-019-1751-y. Genome Biol. 2019. PMID: 31366358 Free PMC article.
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