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Accurate, multi-kb reads resolve complex populations and detect rare microorganisms.
Sharon I, Kertesz M, Hug LA, Pushkarev D, Blauwkamp TA, Castelle CJ, Amirebrahimi M, Thomas BC, Burstein D, Tringe SG, Williams KH, Banfield JF. Sharon I, et al. Among authors: amirebrahimi m. Genome Res. 2015 Apr;25(4):534-43. doi: 10.1101/gr.183012.114. Epub 2015 Feb 9. Genome Res. 2015. PMID: 25665577 Free PMC article.
Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica.
Goordial J, Raymond-Bouchard I, Riley R, Ronholm J, Shapiro N, Woyke T, LaButti KM, Tice H, Amirebrahimi M, Grigoriev IV, Greer C, Bakermans C, Whyte L. Goordial J, et al. Among authors: amirebrahimi m. Genome Announc. 2016 Mar 17;4(2):e00069-16. doi: 10.1128/genomeA.00069-16. Genome Announc. 2016. PMID: 26988035 Free PMC article.
The genome of Xylona heveae provides a window into fungal endophytism.
Gazis R, Kuo A, Riley R, LaButti K, Lipzen A, Lin J, Amirebrahimi M, Hesse CN, Spatafora JW, Henrissat B, Hainaut M, Grigoriev IV, Hibbett DS. Gazis R, et al. Among authors: amirebrahimi m. Fungal Biol. 2016 Jan;120(1):26-42. doi: 10.1016/j.funbio.2015.10.002. Epub 2015 Oct 22. Fungal Biol. 2016. PMID: 26693682
Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants.
Álvarez-Escribano I, Sasse C, Bok JW, Na H, Amirebrahimi M, Lipzen A, Schackwitz W, Martin J, Barry K, Gutiérrez G, Cea-Sánchez S, Marcos AT, Grigoriev IV, Keller NP, Braus GH, Cánovas D. Álvarez-Escribano I, et al. Among authors: amirebrahimi m. BMC Biol. 2019 Nov 11;17(1):88. doi: 10.1186/s12915-019-0702-0. BMC Biol. 2019. PMID: 31711484 Free PMC article.
Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus.
Koch RA, Yoon GM, Aryal UK, Lail K, Amirebrahimi M, LaButti K, Lipzen A, Riley R, Barry K, Henrissat B, Grigoriev IV, Herr JR, Aime MC. Koch RA, et al. Among authors: amirebrahimi m. Curr Biol. 2021 Sep 13;31(17):3905-3914.e6. doi: 10.1016/j.cub.2021.06.033. Epub 2021 Jul 9. Curr Biol. 2021. PMID: 34245690 Free article.
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM. Franco MEE, et al. Among authors: amirebrahimi m. New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873. Epub 2021 Dec 7. New Phytol. 2022. PMID: 34797921 Free article.
The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.
Olsen JL, Rouzé P, Verhelst B, Lin YC, Bayer T, Collen J, Dattolo E, De Paoli E, Dittami S, Maumus F, Michel G, Kersting A, Lauritano C, Lohaus R, Töpel M, Tonon T, Vanneste K, Amirebrahimi M, Brakel J, Boström C, Chovatia M, Grimwood J, Jenkins JW, Jueterbock A, Mraz A, Stam WT, Tice H, Bornberg-Bauer E, Green PJ, Pearson GA, Procaccini G, Duarte CM, Schmutz J, Reusch TB, Van de Peer Y. Olsen JL, et al. Among authors: amirebrahimi m. Nature. 2016 Feb 18;530(7590):331-5. doi: 10.1038/nature16548. Epub 2016 Jan 27. Nature. 2016. PMID: 26814964 Free article.
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization.
McCormick RF, Truong SK, Sreedasyam A, Jenkins J, Shu S, Sims D, Kennedy M, Amirebrahimi M, Weers BD, McKinley B, Mattison A, Morishige DT, Grimwood J, Schmutz J, Mullet JE. McCormick RF, et al. Among authors: amirebrahimi m. Plant J. 2018 Jan;93(2):338-354. doi: 10.1111/tpj.13781. Epub 2017 Dec 28. Plant J. 2018. PMID: 29161754 Free article.
20 results