Bepler T - Search Results

1

Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex.

Boyd JL, Skove SL, Rouanet JP, Pilaz LJ, Bepler T, Gordân R, Wray GA, Silver DL. Boyd JL, et al. Among authors: bepler t. Curr Biol. 2015 Mar 16;25(6):772-779. doi: 10.1016/j.cub.2015.01.041. Epub 2015 Feb 19. Curr Biol. 2015. PMID: 25702574 Free PMC article.

2

Divergence in DNA Specificity among Paralogous Transcription Factors Contributes to Their Differential In Vivo Binding.

Shen N, Zhao J, Schipper JL, Zhang Y, Bepler T, Leehr D, Bradley J, Horton J, Lapp H, Gordan R. Shen N, et al. Among authors: bepler t. Cell Syst. 2018 Apr 25;6(4):470-483.e8. doi: 10.1016/j.cels.2018.02.009. Epub 2018 Mar 28. Cell Syst. 2018. PMID: 29605182 Free PMC article.

3

Learning the protein language: Evolution, structure, and function.

Bepler T, Berger B. Bepler T, et al. Cell Syst. 2021 Jun 16;12(6):654-669.e3. doi: 10.1016/j.cels.2021.05.017. Cell Syst. 2021. PMID: 34139171 Free PMC article.

4

Distinct routes to metastasis: plasticity-dependent and plasticity-independent pathways.

Somarelli JA, Schaeffer D, Marengo MS, Bepler T, Rouse D, Ware KE, Hish AJ, Zhao Y, Buckley AF, Epstein JI, Armstrong AJ, Virshup DM, Garcia-Blanco MA. Somarelli JA, et al. Among authors: bepler t. Oncogene. 2016 Aug 18;35(33):4302-11. doi: 10.1038/onc.2015.497. Epub 2016 Jan 11. Oncogene. 2016. PMID: 26751776 Free PMC article.

5

Topaz-Denoise: general deep denoising models for cryoEM and cryoET.

Bepler T, Kelley K, Noble AJ, Berger B. Bepler T, et al. Nat Commun. 2020 Oct 15;11(1):5208. doi: 10.1038/s41467-020-18952-1. Nat Commun. 2020. PMID: 33060581 Free PMC article.

6

CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks.

Zhong ED, Bepler T, Berger B, Davis JH. Zhong ED, et al. Among authors: bepler t. Nat Methods. 2021 Feb;18(2):176-185. doi: 10.1038/s41592-020-01049-4. Epub 2021 Feb 4. Nat Methods. 2021. PMID: 33542510 Free PMC article.

7

An engineered protein-phosphorylation toggle network with implications for endogenous network discovery.

Mishra D, Bepler T, Teague B, Berger B, Broach J, Weiss R. Mishra D, et al. Among authors: bepler t. Science. 2021 Jul 2;373(6550):eaav0780. doi: 10.1126/science.aav0780. Science. 2021. PMID: 34210851 Free PMC article.

8

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs.

Bepler T, Morin A, Noble AJ, Brasch J, Shapiro L, Berger B. Bepler T, et al. Res Comput Mol Biol. 2018 Apr;10812:245-247. Res Comput Mol Biol. 2018. PMID: 29707703 Free PMC article. No abstract available.

9

Visualization of clustered protocadherin neuronal self-recognition complexes.

Brasch J, Goodman KM, Noble AJ, Rapp M, Mannepalli S, Bahna F, Dandey VP, Bepler T, Berger B, Maniatis T, Potter CS, Carragher B, Honig B, Shapiro L. Brasch J, et al. Among authors: bepler t. Nature. 2019 May;569(7755):280-283. doi: 10.1038/s41586-019-1089-3. Epub 2019 Apr 10. Nature. 2019. PMID: 30971825 Free PMC article.

10

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs.

Bepler T, Morin A, Rapp M, Brasch J, Shapiro L, Noble AJ, Berger B. Bepler T, et al. Nat Methods. 2019 Nov;16(11):1153-1160. doi: 10.1038/s41592-019-0575-8. Epub 2019 Oct 7. Nat Methods. 2019. PMID: 31591578 Free PMC article.

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