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PathVisio 3: an extendable pathway analysis toolbox.
Kutmon M, van Iersel MP, Bohler A, Kelder T, Nunes N, Pico AR, Evelo CT. Kutmon M, et al. Among authors: pico ar. PLoS Comput Biol. 2015 Feb 23;11(2):e1004085. doi: 10.1371/journal.pcbi.1004085. eCollection 2015 Feb. PLoS Comput Biol. 2015. PMID: 25706687 Free PMC article.
The emerging world of wikis.
Hu JC, Aramayo R, Bolser D, Conway T, Elsik CG, Gribskov M, Kelder T, Kihara D, Knight TF Jr, Pico AR, Siegele DA, Wanner BL, Welch RD. Hu JC, et al. Among authors: pico ar. Science. 2008 Jun 6;320(5881):1289-90. doi: 10.1126/science.320.5881.1289b. Science. 2008. PMID: 18535227 No abstract available.
WikiPathways: pathway editing for the people.
Pico AR, Kelder T, van Iersel MP, Hanspers K, Conklin BR, Evelo C. Pico AR, et al. PLoS Biol. 2008 Jul 22;6(7):e184. doi: 10.1371/journal.pbio.0060184. PLoS Biol. 2008. PMID: 18651794 Free PMC article.
The public road to high-quality curated biological pathways.
Adriaens ME, Jaillard M, Waagmeester A, Coort SL, Pico AR, Evelo CT. Adriaens ME, et al. Among authors: pico ar. Drug Discov Today. 2008 Oct;13(19-20):856-62. doi: 10.1016/j.drudis.2008.06.013. Epub 2008 Aug 27. Drug Discov Today. 2008. PMID: 18652912 Free PMC article. Review.
Presenting and exploring biological pathways with PathVisio.
van Iersel MP, Kelder T, Pico AR, Hanspers K, Coort S, Conklin BR, Evelo C. van Iersel MP, et al. Among authors: pico ar. BMC Bioinformatics. 2008 Sep 25;9:399. doi: 10.1186/1471-2105-9-399. BMC Bioinformatics. 2008. PMID: 18817533 Free PMC article.
Mining biological pathways using WikiPathways web services.
Kelder T, Pico AR, Hanspers K, van Iersel MP, Evelo C, Conklin BR. Kelder T, et al. Among authors: pico ar. PLoS One. 2009 Jul 30;4(7):e6447. doi: 10.1371/journal.pone.0006447. PLoS One. 2009. PMID: 19649250 Free PMC article.
The BioPAX community standard for pathway data sharing.
Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, Kandasamy K, Lopez-Fuentes AC, Mi H, Pichler E, Rodchenkov I, Splendiani A, Tkachev S, Zucker J, Gopinath G, Rajasimha H, Ramakrishnan R, Shah I, Syed M, Anwar N, Babur O, Blinov M, Brauner E, Corwin D, Donaldson S, Gibbons F, Goldberg R, Hornbeck P, Luna A, Murray-Rust P, Neumann E, Ruebenacker O, Samwald M, van Iersel M, Wimalaratne S, Allen K, Braun B, Whirl-Carrillo M, Cheung KH, Dahlquist K, Finney A, Gillespie M, Glass E, Gong L, Haw R, Honig M, Hubaut O, Kane D, Krupa S, Kutmon M, Leonard J, Marks D, Merberg D, Petri V, Pico A, Ravenscroft D, Ren L, Shah N, Sunshine M, Tang R, Whaley R, Letovksy S, Buetow KH, Rzhetsky A, Schachter V, Sobral BS, Dogrusoz U, McWeeney S, Aladjem M, Birney E, Collado-Vides J, Goto S, Hucka M, Le Novère N, Maltsev N, Pandey A, Thomas P, Wingender E, Karp PD, Sander C, Bader GD. Demir E, et al. Nat Biotechnol. 2010 Sep;28(9):935-42. doi: 10.1038/nbt.1666. Epub 2010 Sep 9. Nat Biotechnol. 2010. PMID: 20829833 Free PMC article.
WikiPathways: building research communities on biological pathways.
Kelder T, van Iersel MP, Hanspers K, Kutmon M, Conklin BR, Evelo CT, Pico AR. Kelder T, et al. Among authors: pico ar. Nucleic Acids Res. 2012 Jan;40(Database issue):D1301-7. doi: 10.1093/nar/gkr1074. Epub 2011 Nov 16. Nucleic Acids Res. 2012. PMID: 22096230 Free PMC article.
105 results