Jin V - Search Results

1

A survey of computational methods in transcriptome-wide alternative splicing analysis.

Wang J, Ye Z, Huang TH, Shi H, Jin V. Wang J, et al. Among authors: jin v. Biomol Concepts. 2015 Mar;6(1):59-66. doi: 10.1515/bmc-2014-0040. Biomol Concepts. 2015. PMID: 25719337 Free PMC article. Review.

2

Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors.

Ye Z, Chen Z, Lan X, Hara S, Sunkel B, Huang TH, Elnitski L, Wang Q, Jin VX. Ye Z, et al. Nucleic Acids Res. 2014 Mar;42(5):2856-69. doi: 10.1093/nar/gkt1338. Epub 2013 Dec 24. Nucleic Acids Res. 2014. PMID: 24369421 Free PMC article.

3

Computational Methods and Correlation of Exon-skipping Events with Splicing, Transcription, and Epigenetic Factors.

Wang J, Ye Z, Huang TH, Shi H, Jin VX. Wang J, et al. Methods Mol Biol. 2017;1513:163-170. doi: 10.1007/978-1-4939-6539-7_11. Methods Mol Biol. 2017. PMID: 27807836 Free PMC article.

4

Roles of Distal and Genic Methylation in the Development of Prostate Tumorigenesis Revealed by Genome-wide DNA Methylation Analysis.

Wang Y, Jadhav RR, Liu J, Wilson D, Chen Y, Thompson IM, Troyer DA, Hernandez J, Shi H, Leach RJ, Huang TH, Jin VX. Wang Y, et al. Sci Rep. 2016 Feb 29;6:22051. doi: 10.1038/srep22051. Sci Rep. 2016. PMID: 26924343 Free PMC article.

5

Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data.

Gu F, Hsu HK, Hsu PY, Wu J, Ma Y, Parvin J, Huang TH, Jin VX. Gu F, et al. BMC Syst Biol. 2010 Dec 17;4:170. doi: 10.1186/1752-0509-4-170. BMC Syst Biol. 2010. PMID: 21167036 Free PMC article.

6

Cancer omics: from regulatory networks to clinical outcomes.

Tang B, Hsu PY, Huang TH, Jin VX. Tang B, et al. Cancer Lett. 2013 Nov 1;340(2):277-83. doi: 10.1016/j.canlet.2012.11.033. Epub 2012 Nov 29. Cancer Lett. 2013. PMID: 23201140 Review.

7

Genome-wide analysis reveals positional-nucleosome-oriented binding pattern of pioneer factor FOXA1.

Ye Z, Chen Z, Sunkel B, Frietze S, Huang TH, Wang Q, Jin VX. Ye Z, et al. Nucleic Acids Res. 2016 Sep 19;44(16):7540-54. doi: 10.1093/nar/gkw659. Epub 2016 Jul 25. Nucleic Acids Res. 2016. PMID: 27458208 Free PMC article.

8

Methyl-binding DNA capture Sequencing for Patient Tissues.

Jadhav RR, Wang YV, Hsu YT, Liu J, Garcia D, Lai Z, Huang TH, Jin VX. Jadhav RR, et al. Among authors: jin vx. J Vis Exp. 2016 Oct 31;(116):54131. doi: 10.3791/54131. J Vis Exp. 2016. PMID: 27842364 Free PMC article.

9

Integration of DNA methylation and gene transcription across nineteen cell types reveals cell type-specific and genomic region-dependent regulatory patterns.

Tang B, Zhou Y, Wang CM, Huang TH, Jin VX. Tang B, et al. Sci Rep. 2017 Jun 15;7(1):3626. doi: 10.1038/s41598-017-03837-z. Sci Rep. 2017. PMID: 28620196 Free PMC article.

10

Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops.

Zhou Y, Cheng X, Yang Y, Li T, Li J, Huang TH, Wang J, Lin S, Jin VX. Zhou Y, et al. Genome Med. 2020 Aug 12;12(1):69. doi: 10.1186/s13073-020-00769-8. Genome Med. 2020. PMID: 32787954 Free PMC article.

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