Štěpánek J - Search Results

1

DNA Electric Charge Oscillations Govern Protein-DNA Recognition.

Štěpánek J, Kopecký V Jr, Turpin PY, Li Z, Alpert B, Zentz C. Štěpánek J, et al. PLoS One. 2015 Apr 29;10(4):e0124444. doi: 10.1371/journal.pone.0124444. eCollection 2015. PLoS One. 2015. PMID: 25923532 Free PMC article.

2

Protonation effect of tyrosine in a segment of the SRF transcription factor: a combined optical spectroscopy, molecular dynamics, and density functional theory calculation study.

Profantová B, Profant V, Zíma V, Kopecký V Jr, Bednárová L, Zentz C, Baumruk V, Turpin PY, Štěpánek J. Profantová B, et al. Among authors: stepanek j. J Phys Chem B. 2013 Dec 19;117(50):16086-95. doi: 10.1021/jp4099864. Epub 2013 Nov 27. J Phys Chem B. 2013. PMID: 24261585

3

Organization of the MADS box from human SRF revealed by tyrosine perturbation.

Profantová B, Coïc YM, Profant V, Štěpánek J, Kopecký V Jr, Turpin PY, Alpert B, Zentz C. Profantová B, et al. Among authors: stepanek j. J Phys Chem B. 2015 Feb 5;119(5):1793-801. doi: 10.1021/jp508897p. Epub 2015 Jan 22. J Phys Chem B. 2015. PMID: 25558766

4

Raman study of potential "antisense" drugs: nonamer oligonucleotide duplexes with a central mismatch as a model system for the binding selectivity evaluation.

Nemecek D, Stepanek J, Turpin PY, Rosenberg I. Nemecek D, et al. Among authors: stepanek j. Biopolymers. 2004 May-Jun 5;74(1-2):115-9. doi: 10.1002/bip.20056. Biopolymers. 2004. PMID: 15137107

5

C-->G base mutations in the CArG box of c-fos serum response element alter its bending flexibility. Consequences for core-SRF recognition.

Stepanek J, Vincent M, Turpin PY, Paulin D, Fermandjian S, Alpert B, Zentz C. Stepanek J, et al. FEBS J. 2007 May;274(9):2333-48. doi: 10.1111/j.1742-4658.2007.05768.x. Epub 2007 Apr 2. FEBS J. 2007. PMID: 17403043 Free article.

6

Structural and dynamic changes of the serum response element and the core domain of serum response factor induced by their association.

Stepánek J, Kopecký V Jr, Mezzetti A, Turpin PY, Paulin D, Alpert B, Zentz C. Stepánek J, et al. Biochem Biophys Res Commun. 2010 Jan 1;391(1):203-8. doi: 10.1016/j.bbrc.2009.11.032. Epub 2009 Nov 10. Biochem Biophys Res Commun. 2010. PMID: 19903461

7

Structural features of a central mismatch in oligonucleotide hybrid duplexes visualized via Raman spectroscopy: model system for evaluation of potential "antisense" drugs.

Nemecek D, Vaisocherová H, Stepánek J, Turpin PY. Nemecek D, et al. Among authors: stepanek j. Biopolymers. 2005 Sep;79(1):1-8. doi: 10.1002/bip.20277. Biopolymers. 2005. PMID: 15806578

8

Structural changes of human RNase L upon homodimerization investigated by Raman spectroscopy.

Kříž M, Snášel J, Kopecký V Jr, Páv O, Rosenberg I, Stěpánek J. Kříž M, et al. Among authors: stepanek j. Biochim Biophys Acta. 2012 Sep;1824(9):1039-44. doi: 10.1016/j.bbapap.2012.06.002. Epub 2012 Jun 9. Biochim Biophys Acta. 2012. PMID: 22691533

9

Spectral decomposition of intracellular complex fluorescence using multiple-wavelength phase modulation lifetime determination: technical approach and preliminary applications.

Praus P, Gaskova D, Kocisova E, Chaloupka R, Stepanek J, Bok J, Rejman D, Rosenberg I, Turpin PY, Sureau F. Praus P, et al. Among authors: stepanek j. Biopolymers. 2002;67(4-5):339-43. doi: 10.1002/bip.10119. Biopolymers. 2002. PMID: 12012462

10

Interaction of phospholipid dispersions with water-soluble porphyrins as monitored by their Raman temperature profiles.

Procházka M, Stĕpánek J, Turpin PY. Procházka M, et al. Among authors: stepanek j. Chem Phys Lipids. 2004 Dec;132(2):145-56. doi: 10.1016/j.chemphyslip.2004.06.002. Chem Phys Lipids. 2004. PMID: 15555601

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