Korkin D - Search Results

1

The variation game: Cracking complex genetic disorders with NGS and omics data.

Cui H, Dhroso A, Johnson N, Korkin D. Cui H, et al. Among authors: korkin d. Methods. 2015 Jun;79-80:18-31. doi: 10.1016/j.ymeth.2015.04.018. Epub 2015 May 2. Methods. 2015. PMID: 25944472 Review.

2

The yeast protein interaction network has a capacity for self-organization.

Dhroso A, Korkin D, Conant GC. Dhroso A, et al. Among authors: korkin d. FEBS J. 2014 Aug;281(15):3420-32. doi: 10.1111/febs.12870. Epub 2014 Jul 1. FEBS J. 2014. PMID: 24924781 Free article.

3

DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions.

Kuang X, Dhroso A, Han JG, Shyu CR, Korkin D. Kuang X, et al. Among authors: korkin d. Database (Oxford). 2016 Jan 30;2016:bav114. doi: 10.1093/database/bav114. Print 2016. Database (Oxford). 2016. PMID: 26827237 Free PMC article.

4

Short-Stalked Prosthecomicrobium hirschii Cells Have a Caulobacter-Like Cell Cycle.

Williams M, Hoffman MD, Daniel JJ, Madren SM, Dhroso A, Korkin D, Givan SA, Jacobson SC, Brown PJ. Williams M, et al. Among authors: korkin d. J Bacteriol. 2016 Feb 1;198(7):1149-59. doi: 10.1128/JB.00896-15. J Bacteriol. 2016. PMID: 26833409 Free PMC article.

5

Patterns of amino acid conservation in human and animal immunodeficiency viruses.

Voitenko OS, Dhroso A, Feldmann A, Korkin D, Kalinina OV. Voitenko OS, et al. Among authors: korkin d. Bioinformatics. 2016 Sep 1;32(17):i685-i692. doi: 10.1093/bioinformatics/btw441. Bioinformatics. 2016. PMID: 27587690

6

Incorporation of protein binding effects into likelihood ratio test for exome sequencing data.

Zhang D, Cui H, Korkin D, Wu Z. Zhang D, et al. Among authors: korkin d. BMC Proc. 2016 Oct 18;10(Suppl 7):275-281. doi: 10.1186/s12919-016-0043-8. eCollection 2016. BMC Proc. 2016. PMID: 27980649 Free PMC article.

7

Systematic Mutagenesis of Serine Hydroxymethyltransferase Reveals an Essential Role in Nematode Resistance.

Kandoth PK, Liu S, Prenger E, Ludwig A, Lakhssassi N, Heinz R, Zhou Z, Howland A, Gunther J, Eidson S, Dhroso A, LaFayette P, Tucker D, Johnson S, Anderson J, Alaswad A, Cianzio SR, Parrott WA, Korkin D, Meksem K, Mitchum MG. Kandoth PK, et al. Among authors: korkin d. Plant Physiol. 2017 Nov;175(3):1370-1380. doi: 10.1104/pp.17.00553. Epub 2017 Sep 14. Plant Physiol. 2017. PMID: 28912378 Free PMC article.

8

Novel global effector mining from the transcriptome of early life stages of the soybean cyst nematode Heterodera glycines.

Gardner M, Dhroso A, Johnson N, Davis EL, Baum TJ, Korkin D, Mitchum MG. Gardner M, et al. Among authors: korkin d. Sci Rep. 2018 Feb 6;8(1):2505. doi: 10.1038/s41598-018-20536-5. Sci Rep. 2018. PMID: 29410430 Free PMC article.

9

Biological classification with RNA-seq data: Can alternatively spliced transcript expression enhance machine learning classifiers?

Johnson NT, Dhroso A, Hughes KJ, Korkin D. Johnson NT, et al. Among authors: korkin d. RNA. 2018 Sep;24(9):1119-1132. doi: 10.1261/rna.062802.117. Epub 2018 Jun 25. RNA. 2018. PMID: 29941426 Free PMC article.

10

Multilayer View of Pathogenic SNVs in Human Interactome through In Silico Edgetic Profiling.

Cui H, Zhao N, Korkin D. Cui H, et al. Among authors: korkin d. J Mol Biol. 2018 Sep 14;430(18 Pt A):2974-2992. doi: 10.1016/j.jmb.2018.07.012. Epub 2018 Jul 12. J Mol Biol. 2018. PMID: 30017919

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