Silva A - Search Results

1

In Silico Protein-Protein Interactions: Avoiding Data and Method Biases Over Sensitivity and Specificity.

Folador EL, de Oliveira Junior AF, Tiwari S, Jamal SB, Ferreira RS, Barh D, Ghosh P, Silva A, Azevedo V. Folador EL, et al. Among authors: silva a. Curr Protein Pept Sci. 2015;16(8):689-700. doi: 10.2174/1389203716666150505235437. Curr Protein Pept Sci. 2015. PMID: 25961403 Review.

2

An improved interolog mapping-based computational prediction of protein-protein interactions with increased network coverage.

Folador EL, Hassan SS, Lemke N, Barh D, Silva A, Ferreira RS, Azevedo V. Folador EL, et al. Among authors: silva a. Integr Biol (Camb). 2014 Nov;6(11):1080-7. doi: 10.1039/c4ib00136b. Integr Biol (Camb). 2014. PMID: 25209055

3

In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks.

Folador EL, de Carvalho PV, Silva WM, Ferreira RS, Silva A, Gromiha M, Ghosh P, Barh D, Azevedo V, Röttger R. Folador EL, et al. Among authors: silva a, silva wm. BMC Syst Biol. 2016 Nov 4;10(1):103. doi: 10.1186/s12918-016-0346-4. BMC Syst Biol. 2016. PMID: 27814699 Free PMC article.

4

Label-free proteomic analysis to confirm the predicted proteome of Corynebacterium pseudotuberculosis under nitrosative stress mediated by nitric oxide.

Silva WM, Carvalho RD, Soares SC, Bastos IF, Folador EL, Souza GH, Le Loir Y, Miyoshi A, Silva A, Azevedo V. Silva WM, et al. Among authors: silva a. BMC Genomics. 2014 Dec 4;15(1):1065. doi: 10.1186/1471-2164-15-1065. BMC Genomics. 2014. PMID: 25477071 Free PMC article.

5

Corynebacterium pseudotuberculosis may be under anagenesis and biovar Equi forms biovar Ovis: a phylogenic inference from sequence and structural analysis.

Oliveira A, Teixeira P, Azevedo M, Jamal SB, Tiwari S, Almeida S, Silva A, Barh D, Dorneles EM, Haas DJ, Heinemann MB, Ghosh P, Lage AP, Figueiredo H, Ferreira RS, Azevedo V. Oliveira A, et al. Among authors: silva a. BMC Microbiol. 2016 Jun 2;16:100. doi: 10.1186/s12866-016-0717-4. BMC Microbiol. 2016. PMID: 27251711 Free PMC article.

6

SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology.

Mariano DC, Pereira FL, Aguiar EL, Oliveira LC, Benevides L, Guimarães LC, Folador EL, Sousa TJ, Ghosh P, Barh D, Figueiredo HC, Silva A, Ramos RT, Azevedo VA. Mariano DC, et al. Among authors: silva a. BMC Bioinformatics. 2016 Dec 15;17(Suppl 18):456. doi: 10.1186/s12859-016-1344-7. BMC Bioinformatics. 2016. PMID: 28105921 Free PMC article.

7

An integrative in-silico approach for therapeutic target identification in the human pathogen Corynebacterium diphtheriae.

Jamal SB, Hassan SS, Tiwari S, Viana MV, Benevides LJ, Ullah A, Turjanski AG, Barh D, Ghosh P, Costa DA, Silva A, Röttger R, Baumbach J, Azevedo VAC. Jamal SB, et al. Among authors: silva a. PLoS One. 2017 Oct 19;12(10):e0186401. doi: 10.1371/journal.pone.0186401. eCollection 2017. PLoS One. 2017. PMID: 29049350 Free PMC article.

8

C. pseudotuberculosis Phop confers virulence and may be targeted by natural compounds.

Tiwari S, da Costa MP, Almeida S, Hassan SS, Jamal SB, Oliveira A, Folador EL, Rocha F, de Abreu VA, Dorella F, Hirata R, de Oliveira DM, da Silva Teixeira MF, Silva A, Barh D, Azevedo V. Tiwari S, et al. Among authors: silva a. Integr Biol (Camb). 2014 Nov;6(11):1088-99. doi: 10.1039/c4ib00140k. Integr Biol (Camb). 2014. PMID: 25212181

9

CMRegNet-An interspecies reference database for corynebacterial and mycobacterial regulatory networks.

Abreu VA, Almeida S, Tiwari S, Hassan SS, Mariano D, Silva A, Baumbach J, Azevedo V, Röttger R. Abreu VA, et al. Among authors: silva a. BMC Genomics. 2015 Jun 11;16(1):452. doi: 10.1186/s12864-015-1631-0. BMC Genomics. 2015. PMID: 26062809 Free PMC article.

10

MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes.

Mariano DC, Pereira FL, Ghosh P, Barh D, Figueiredo HC, Silva A, Ramos RT, Azevedo VA. Mariano DC, et al. Among authors: silva a. Bioinformation. 2015 Jun 30;11(6):276-9. doi: 10.6026/97320630011276. eCollection 2015. Bioinformation. 2015. PMID: 26229287 Free PMC article.

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