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Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection.
Ewing AD, Houlahan KE, Hu Y, Ellrott K, Caloian C, Yamaguchi TN, Bare JC, P'ng C, Waggott D, Sabelnykova VY; ICGC-TCGA DREAM Somatic Mutation Calling Challenge participants; Kellen MR, Norman TC, Haussler D, Friend SH, Stolovitzky G, Margolin AA, Stuart JM, Boutros PC. Ewing AD, et al. Among authors: hu y. Nat Methods. 2015 Jul;12(7):623-30. doi: 10.1038/nmeth.3407. Epub 2015 May 18. Nat Methods. 2015. PMID: 25984700 Free PMC article.
Computationally inferred cell-type specific epigenome-wide DNA methylation analysis unveils distinct methylation patterns among immune cells for HIV infection in three cohorts.
Zhang X, Hu Y, Vandenhoudt RE, Yan C, Marconi VC, Cohen MH, Wang Z, Justice AC, Aouizerat BE, Xu K. Zhang X, et al. Among authors: hu y. PLoS Pathog. 2024 Mar 11;20(3):e1012063. doi: 10.1371/journal.ppat.1012063. eCollection 2024 Mar. PLoS Pathog. 2024. PMID: 38466776 Free PMC article.
Prioritizing oral bioavailability in drug development strategies.
Xie L, Hong Y, Hu Y, Li H, Lou J, Zhou X. Xie L, et al. Among authors: hu y. Future Med Chem. 2024 Dec 26:1-3. doi: 10.1080/17568919.2024.2444871. Online ahead of print. Future Med Chem. 2024. PMID: 39723437 No abstract available.
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