Kim JK - Search Results

1

The technology and biology of single-cell RNA sequencing.

Kolodziejczyk AA, Kim JK, Svensson V, Marioni JC, Teichmann SA. Kolodziejczyk AA, et al. Among authors: kim jk. Mol Cell. 2015 May 21;58(4):610-20. doi: 10.1016/j.molcel.2015.04.005. Mol Cell. 2015. PMID: 26000846 Free article. Review.

2

Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data.

Kim JK, Marioni JC. Kim JK, et al. Genome Biol. 2013 Jan 28;14(1):R7. doi: 10.1186/gb-2013-14-1-r7. Genome Biol. 2013. PMID: 23360624 Free PMC article.

3

Accounting for technical noise in single-cell RNA-seq experiments.

Brennecke P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Heisler MG. Brennecke P, et al. Among authors: kim jk. Nat Methods. 2013 Nov;10(11):1093-5. doi: 10.1038/nmeth.2645. Epub 2013 Sep 22. Nat Methods. 2013. PMID: 24056876

4

Genome-wide bisulfite sequencing in zygotes identifies demethylation targets and maps the contribution of TET3 oxidation.

Peat JR, Dean W, Clark SJ, Krueger F, Smallwood SA, Ficz G, Kim JK, Marioni JC, Hore TA, Reik W. Peat JR, et al. Among authors: kim jk. Cell Rep. 2014 Dec 24;9(6):1990-2000. doi: 10.1016/j.celrep.2014.11.034. Epub 2014 Dec 12. Cell Rep. 2014. PMID: 25497087 Free PMC article.

5

Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation.

Kolodziejczyk AA, Kim JK, Tsang JC, Ilicic T, Henriksson J, Natarajan KN, Tuck AC, Gao X, Bühler M, Liu P, Marioni JC, Teichmann SA. Kolodziejczyk AA, et al. Among authors: kim jk. Cell Stem Cell. 2015 Oct 1;17(4):471-85. doi: 10.1016/j.stem.2015.09.011. Cell Stem Cell. 2015. PMID: 26431182 Free PMC article.

6

Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression.

Kim JK, Kolodziejczyk AA, Ilicic T, Teichmann SA, Marioni JC. Kim JK, et al. Nat Commun. 2015 Oct 22;6:8687. doi: 10.1038/ncomms9687. Nat Commun. 2015. PMID: 26489834 Free PMC article.

7

Corrigendum: Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression.

Kim JK, Kolodziejczyk AA, Ilicic T, Teichmann SA, Marioni JC. Kim JK, et al. Nat Commun. 2016 Jan 11;7:10415. doi: 10.1038/ncomms10415. Nat Commun. 2016. PMID: 26752026 Free PMC article. No abstract available.

8

Classification of low quality cells from single-cell RNA-seq data.

Ilicic T, Kim JK, Kolodziejczyk AA, Bagger FO, McCarthy DJ, Marioni JC, Teichmann SA. Ilicic T, et al. Among authors: kim jk. Genome Biol. 2016 Feb 17;17:29. doi: 10.1186/s13059-016-0888-1. Genome Biol. 2016. PMID: 26887813 Free PMC article.

9

Stella modulates transcriptional and endogenous retrovirus programs during maternal-to-zygotic transition.

Huang Y, Kim JK, Do DV, Lee C, Penfold CA, Zylicz JJ, Marioni JC, Hackett JA, Surani MA. Huang Y, et al. Among authors: kim jk. Elife. 2017 Mar 21;6:e22345. doi: 10.7554/eLife.22345. Elife. 2017. PMID: 28323615 Free PMC article.

10

Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression.

Kar G, Kim JK, Kolodziejczyk AA, Natarajan KN, Torlai Triglia E, Mifsud B, Elderkin S, Marioni JC, Pombo A, Teichmann SA. Kar G, et al. Among authors: kim jk. Nat Commun. 2017 Jun 26;8(1):36. doi: 10.1038/s41467-017-00052-2. Nat Commun. 2017. PMID: 28652613 Free PMC article.

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