Marioni JC - Search Results

1

The technology and biology of single-cell RNA sequencing.

Kolodziejczyk AA, Kim JK, Svensson V, Marioni JC, Teichmann SA. Kolodziejczyk AA, et al. Among authors: marioni jc. Mol Cell. 2015 May 21;58(4):610-20. doi: 10.1016/j.molcel.2015.04.005. Mol Cell. 2015. PMID: 26000846 Free article. Review.

2

Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data.

Kim JK, Marioni JC. Kim JK, et al. Among authors: marioni jc. Genome Biol. 2013 Jan 28;14(1):R7. doi: 10.1186/gb-2013-14-1-r7. Genome Biol. 2013. PMID: 23360624 Free PMC article.

3

Accounting for technical noise in single-cell RNA-seq experiments.

Brennecke P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Heisler MG. Brennecke P, et al. Among authors: marioni jc. Nat Methods. 2013 Nov;10(11):1093-5. doi: 10.1038/nmeth.2645. Epub 2013 Sep 22. Nat Methods. 2013. PMID: 24056876

4

Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.

Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A. Petryszak R, et al. Among authors: marioni jc. Nucleic Acids Res. 2014 Jan;42(Database issue):D926-32. doi: 10.1093/nar/gkt1270. Epub 2013 Dec 4. Nucleic Acids Res. 2014. PMID: 24304889 Free PMC article.

5

Random monoallelic gene expression increases upon embryonic stem cell differentiation.

Eckersley-Maslin MA, Thybert D, Bergmann JH, Marioni JC, Flicek P, Spector DL. Eckersley-Maslin MA, et al. Among authors: marioni jc. Dev Cell. 2014 Feb 24;28(4):351-65. doi: 10.1016/j.devcel.2014.01.017. Dev Cell. 2014. PMID: 24576421 Free PMC article.

6

Identifying cell types from spatially referenced single-cell expression datasets.

Pettit JB, Tomer R, Achim K, Richardson S, Azizi L, Marioni J. Pettit JB, et al. PLoS Comput Biol. 2014 Sep 25;10(9):e1003824. doi: 10.1371/journal.pcbi.1003824. eCollection 2014 Sep. PLoS Comput Biol. 2014. PMID: 25254363 Free PMC article.

7

Genome-wide bisulfite sequencing in zygotes identifies demethylation targets and maps the contribution of TET3 oxidation.

Peat JR, Dean W, Clark SJ, Krueger F, Smallwood SA, Ficz G, Kim JK, Marioni JC, Hore TA, Reik W. Peat JR, et al. Among authors: marioni jc. Cell Rep. 2014 Dec 24;9(6):1990-2000. doi: 10.1016/j.celrep.2014.11.034. Epub 2014 Dec 12. Cell Rep. 2014. PMID: 25497087 Free PMC article.

8

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells.

Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O. Buettner F, et al. Among authors: marioni jc. Nat Biotechnol. 2015 Feb;33(2):155-60. doi: 10.1038/nbt.3102. Epub 2015 Jan 19. Nat Biotechnol. 2015. PMID: 25599176

9

Computational and analytical challenges in single-cell transcriptomics.

Stegle O, Teichmann SA, Marioni JC. Stegle O, et al. Among authors: marioni jc. Nat Rev Genet. 2015 Mar;16(3):133-45. doi: 10.1038/nrg3833. Epub 2015 Jan 28. Nat Rev Genet. 2015. PMID: 25628217 Review.

10

High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin.

Achim K, Pettit JB, Saraiva LR, Gavriouchkina D, Larsson T, Arendt D, Marioni JC. Achim K, et al. Among authors: marioni jc. Nat Biotechnol. 2015 May;33(5):503-9. doi: 10.1038/nbt.3209. Epub 2015 Apr 13. Nat Biotechnol. 2015. PMID: 25867922

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