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ProCARs: Progressive Reconstruction of Ancestral Gene Orders.
Perrin A, Varré JS, Blanquart S, Ouangraoua A. Perrin A, et al. Among authors: ouangraoua a. BMC Genomics. 2015;16 Suppl 5(Suppl 5):S6. doi: 10.1186/1471-2164-16-S5-S6. Epub 2015 May 26. BMC Genomics. 2015. PMID: 26040958 Free PMC article.
Genome dedoubling by DCJ and reversal.
Thomas A, Varré JS, Ouangraoua A. Thomas A, et al. Among authors: ouangraoua a. BMC Bioinformatics. 2011 Oct 5;12 Suppl 9(Suppl 9):S20. doi: 10.1186/1471-2105-12-S9-S20. BMC Bioinformatics. 2011. PMID: 22152053 Free PMC article.
Reconstructing a SuperGeneTree minimizing reconciliation.
Lafond M, Ouangraoua A, El-Mabrouk N. Lafond M, et al. Among authors: ouangraoua a. BMC Bioinformatics. 2015;16 Suppl 14(Suppl 14):S4. doi: 10.1186/1471-2105-16-S14-S4. Epub 2015 Oct 2. BMC Bioinformatics. 2015. PMID: 26451911 Free PMC article.
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies.
Luhmann N, Lafond M, Thevenin A, Ouangraoua A, Wittler R, Chauve C. Luhmann N, et al. Among authors: ouangraoua a. IEEE/ACM Trans Comput Biol Bioinform. 2019 Jul-Aug;16(4):1364-1373. doi: 10.1109/TCBB.2017.2661761. Epub 2017 Jan 31. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 28166504
Gene Tree Construction and Correction Using SuperTree and Reconciliation.
Lafond M, Chauve C, El-Mabrouk N, Ouangraoua A. Lafond M, et al. Among authors: ouangraoua a. IEEE/ACM Trans Comput Biol Bioinform. 2018 Sep-Oct;15(5):1560-1570. doi: 10.1109/TCBB.2017.2720581. Epub 2017 Jun 27. IEEE/ACM Trans Comput Biol Bioinform. 2018. PMID: 28678712
36 results