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A community effort to assess and improve drug sensitivity prediction algorithms.
Costello JC, Heiser LM, Georgii E, Gönen M, Menden MP, Wang NJ, Bansal M, Ammad-ud-din M, Hintsanen P, Khan SA, Mpindi JP, Kallioniemi O, Honkela A, Aittokallio T, Wennerberg K; NCI DREAM Community; Collins JJ, Gallahan D, Singer D, Saez-Rodriguez J, Kaski S, Gray JW, Stolovitzky G. Costello JC, et al. Nat Biotechnol. 2014 Dec;32(12):1202-12. doi: 10.1038/nbt.2877. Epub 2014 Jun 1. Nat Biotechnol. 2014. PMID: 24880487 Free PMC article.
Kernel Multitask Regression for Toxicogenetics.
Bernard E, Jiao Y, Scornet E, Stoven V, Walter T, Vert JP. Bernard E, et al. Among authors: walter t. Mol Inform. 2017 Oct;36(10). doi: 10.1002/minf.201700053. Epub 2017 Sep 26. Mol Inform. 2017. PMID: 28949440
Prediction of human population responses to toxic compounds by a collaborative competition.
Eduati F, Mangravite LM, Wang T, Tang H, Bare JC, Huang R, Norman T, Kellen M, Menden MP, Yang J, Zhan X, Zhong R, Xiao G, Xia M, Abdo N, Kosyk O; NIEHS-NCATS-UNC DREAM Toxicogenetics Collaboration; Friend S, Dearry A, Simeonov A, Tice RR, Rusyn I, Wright FA, Stolovitzky G, Xie Y, Saez-Rodriguez J. Eduati F, et al. Nat Biotechnol. 2015 Sep;33(9):933-40. doi: 10.1038/nbt.3299. Epub 2015 Aug 10. Nat Biotechnol. 2015. PMID: 26258538 Free PMC article.
A computational framework to study sub-cellular RNA localization.
Samacoits A, Chouaib R, Safieddine A, Traboulsi AM, Ouyang W, Zimmer C, Peter M, Bertrand E, Walter T, Mueller F. Samacoits A, et al. Among authors: walter t. Nat Commun. 2018 Nov 2;9(1):4584. doi: 10.1038/s41467-018-06868-w. Nat Commun. 2018. PMID: 30389932 Free PMC article.
FISH-quant v2: a scalable and modular tool for smFISH image analysis.
Imbert A, Ouyang W, Safieddine A, Coleno E, Zimmer C, Bertrand E, Walter T, Mueller F. Imbert A, et al. Among authors: walter t. RNA. 2022 Jun;28(6):786-795. doi: 10.1261/rna.079073.121. Epub 2022 Mar 28. RNA. 2022. PMID: 35347070 Free PMC article.
Spatial transcriptomics for respiratory research and medicine.
Curras-Alonso S, Soulier J, Walter T, Mueller F, Londoño-Vallejo A, Fouillade C. Curras-Alonso S, et al. Among authors: walter t. Eur Respir J. 2021 Jul 29;58(1):2004314. doi: 10.1183/13993003.04314-2020. Print 2021 Jul. Eur Respir J. 2021. PMID: 33833036 Free article. No abstract available.
861 results