Silander OK - Search Results

1

Expression noise facilitates the evolution of gene regulation.

Wolf L, Silander OK, van Nimwegen E. Wolf L, et al. Among authors: silander ok. Elife. 2015 Jun 17;4:e05856. doi: 10.7554/eLife.05856. Elife. 2015. PMID: 26080931 Free PMC article.

2

The predictability of molecular evolution during functional innovation.

Blank D, Wolf L, Ackermann M, Silander OK. Blank D, et al. Among authors: silander ok. Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):3044-9. doi: 10.1073/pnas.1318797111. Epub 2014 Feb 10. Proc Natl Acad Sci U S A. 2014. PMID: 24516157 Free PMC article.

3

Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software.

Kaiser M, Jug F, Julou T, Deshpande S, Pfohl T, Silander OK, Myers G, van Nimwegen E. Kaiser M, et al. Among authors: silander ok. Nat Commun. 2018 Jan 15;9(1):212. doi: 10.1038/s41467-017-02505-0. Nat Commun. 2018. PMID: 29335514 Free PMC article.

4

Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli.

Hofsteenge N, van Nimwegen E, Silander OK. Hofsteenge N, et al. Among authors: silander ok. BMC Microbiol. 2013 Feb 4;13:25. doi: 10.1186/1471-2180-13-25. BMC Microbiol. 2013. PMID: 23379956 Free PMC article.

5

Automated reconstruction of whole-genome phylogenies from short-sequence reads.

Bertels F, Silander OK, Pachkov M, Rainey PB, van Nimwegen E. Bertels F, et al. Among authors: silander ok. Mol Biol Evol. 2014 May;31(5):1077-88. doi: 10.1093/molbev/msu088. Epub 2014 Mar 5. Mol Biol Evol. 2014. PMID: 24600054 Free PMC article.

6

A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli.

Silander OK, Nikolic N, Zaslaver A, Bren A, Kikoin I, Alon U, Ackermann M. Silander OK, et al. PLoS Genet. 2012 Jan;8(1):e1002443. doi: 10.1371/journal.pgen.1002443. Epub 2012 Jan 19. PLoS Genet. 2012. PMID: 22275871 Free PMC article.

7

Gene regulation in Escherichia coli is commonly selected for both high plasticity and low noise.

Vlková M, Silander OK. Vlková M, et al. Among authors: silander ok. Nat Ecol Evol. 2022 Aug;6(8):1165-1179. doi: 10.1038/s41559-022-01783-2. Epub 2022 Jun 20. Nat Ecol Evol. 2022. PMID: 35726087

8

Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality.

Freed NE, Bumann D, Silander OK. Freed NE, et al. Among authors: silander ok. BMC Microbiol. 2016 Sep 6;16(1):203. doi: 10.1186/s12866-016-0818-0. BMC Microbiol. 2016. PMID: 27599549 Free PMC article.

9

A simple screen to identify promoters conferring high levels of phenotypic noise.

Freed NE, Silander OK, Stecher B, Böhm A, Hardt WD, Ackermann M. Freed NE, et al. Among authors: silander ok. PLoS Genet. 2008 Dec;4(12):e1000307. doi: 10.1371/journal.pgen.1000307. Epub 2008 Dec 19. PLoS Genet. 2008. PMID: 19096504 Free PMC article.

10

Patterns of evolutionary conservation of essential genes correlate with their compensability.

Bergmiller T, Ackermann M, Silander OK. Bergmiller T, et al. Among authors: silander ok. PLoS Genet. 2012 Jun;8(6):e1002803. doi: 10.1371/journal.pgen.1002803. Epub 2012 Jun 28. PLoS Genet. 2012. PMID: 22761596 Free PMC article.

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