Shanley DP - Search Results

1

Genome-Wide MicroRNA and Gene Analysis of Mesenchymal Stem Cell Chondrogenesis Identifies an Essential Role and Multiple Targets for miR-140-5p.

Barter MJ, Tselepi M, Gómez R, Woods S, Hui W, Smith GR, Shanley DP, Clark IM, Young DA. Barter MJ, et al. Among authors: shanley dp. Stem Cells. 2015 Nov;33(11):3266-80. doi: 10.1002/stem.2093. Epub 2015 Jul 29. Stem Cells. 2015. PMID: 26175215 Free PMC article.

2

Modelling the response of FOXO transcription factors to multiple post-translational modifications made by ageing-related signalling pathways.

Smith GR, Shanley DP. Smith GR, et al. Among authors: shanley dp. PLoS One. 2010 Jun 14;5(6):e11092. doi: 10.1371/journal.pone.0011092. PLoS One. 2010. PMID: 20567500 Free PMC article.

3

Systems modelling of NHEJ reveals the importance of redox regulation of Ku70/80 in the dynamics of dna damage foci.

Dolan D, Nelson G, Zupanic A, Smith G, Shanley D. Dolan D, et al. PLoS One. 2013;8(2):e55190. doi: 10.1371/journal.pone.0055190. Epub 2013 Feb 6. PLoS One. 2013. PMID: 23457464 Free PMC article.

4

Computational modelling of the regulation of Insulin signalling by oxidative stress.

Smith GR, Shanley DP. Smith GR, et al. Among authors: shanley dp. BMC Syst Biol. 2013 May 24;7:41. doi: 10.1186/1752-0509-7-41. BMC Syst Biol. 2013. PMID: 23705851 Free PMC article.

5

Increasing extracellular H2O2 produces a bi-phasic response in intracellular H2O2, with peroxiredoxin hyperoxidation only triggered once the cellular H2O2-buffering capacity is overwhelmed.

Tomalin LE, Day AM, Underwood ZE, Smith GR, Dalle Pezze P, Rallis C, Patel W, Dickinson BC, Bähler J, Brewer TF, Chang CJ, Shanley DP, Veal EA. Tomalin LE, et al. Among authors: shanley dp. Free Radic Biol Med. 2016 Jun;95:333-48. doi: 10.1016/j.freeradbiomed.2016.02.035. Epub 2016 Mar 2. Free Radic Biol Med. 2016. PMID: 26944189 Free PMC article.

6

TimiRGeN: R/Bioconductor package for time series microRNA-mRNA integration and analysis.

Patel K, Chandrasegaran S, Clark IM, Proctor CJ, Young DA, Shanley DP. Patel K, et al. Among authors: shanley dp. Bioinformatics. 2021 Oct 25;37(20):3604-3609. doi: 10.1093/bioinformatics/btab377. Bioinformatics. 2021. PMID: 33993215 Free PMC article.

7

Systems analysis of miR-199a/b-5p and multiple miR-199a/b-5p targets during chondrogenesis.

Patel K, Barter M, Soul J, Clark P, Proctor C, Clark I, Young D, Shanley DP. Patel K, et al. Among authors: shanley dp. Elife. 2024 Oct 14;12:RP89701. doi: 10.7554/eLife.89701. Elife. 2024. PMID: 39401064 Free PMC article.

8

Detecting translational regulation by change point analysis of ribosome profiling data sets.

Zupanic A, Meplan C, Grellscheid SN, Mathers JC, Kirkwood TB, Hesketh JE, Shanley DP. Zupanic A, et al. Among authors: shanley dp. RNA. 2014 Oct;20(10):1507-18. doi: 10.1261/rna.045286.114. Epub 2014 Aug 21. RNA. 2014. PMID: 25147239 Free PMC article.

9

Cytosolic Self-DNA-A Potential Source of Chronic Inflammation in Aging.

Akbari M, Shanley DP, Bohr VA, Rasmussen LJ. Akbari M, et al. Among authors: shanley dp. Cells. 2021 Dec 15;10(12):3544. doi: 10.3390/cells10123544. Cells. 2021. PMID: 34944052 Free PMC article. Review.

10

Modeling and gene knockdown to assess the contribution of nonsense-mediated decay, premature termination, and selenocysteine insertion to the selenoprotein hierarchy.

Zupanic A, Meplan C, Huguenin GV, Hesketh JE, Shanley DP. Zupanic A, et al. Among authors: shanley dp. RNA. 2016 Jul;22(7):1076-84. doi: 10.1261/rna.055749.115. Epub 2016 May 20. RNA. 2016. PMID: 27208313 Free PMC article.

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